Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01945 ATGGCTCAGCATAACAATGCCAACATTAACAACATTGTGAGCCAACAACAGCAGCTAGTGAAGCCAATGTTCCATGACTTTCTTGGCATCAAGAACAAGAACCCCATTGACTCCAATGTCCTTTATGCCCCTAATCTCCACGTCACCTCCTCCTCCTCCTCCCTCTCTTCCACCACCGTGTCCCGCGGCGGTGCCACCTCCGACCTCGCTTCCGGACTAGTGGGAAACAAGAGAAATAATTCTGATTCCACTTTTATTGGTTCCTCTAGAGATTCCTTCCAAATGGTCCCTGATTCCCTTCAAAATTCACATTTGATAAAGATGCTCCGAAACGCAGCTGGAACGGATTGCCTTAGATGTCCTAATGACGATGAAGTGCTCCTTGGTATGCAGTCACTGAAGCCAGCTAGTGGTTTTCAGATATTGCAGCCTCCCACTGGCACTAAGAATGATGTCAATAAATGGGAACAATCTATTCTCATGAATGTTGGCCATTCCATGCAGTATCTACCTCATGGTGGTCAAATACTGCTTTTTATGGACCAAATAACTTCAAGCAAGATGAGGGATACCAATGCTGGTTCTTCATTTATCTCTCAGTTAGCTGCTGATGAAGGGTCTAGAACCGGAATCAAGGGCACTGGGATTTTGAGTTCCATAAGCACAATCAATGCAGTCACTGAGAAAACTTCATCTATTCTTGGTGGCATCAGACCAAAGCCTGTGACTAACATAGACCCAGAGTCTTCCACACCTTTGAATCGATGTGGGTCAGCATCTGCCAGCTGTCAGATCACTATTTTTTATGGAGGTCAAACTCATGTGTTTGATGATGCAGATGTTATAATGGGTTTAGATGGGTCAAATGGCGGATCTTGGTCCACAACATTCTCAACCGAATCTTTTGTAAAGCTACACCATTATAATAACGCACGAAATGGAGAAAATGAAATAGTTATAGTGAGTAAAATATTTTCTATTACCAGTAGTTCTAGTCATGCCATTGGGCCAGGTGATCGACTAACTACTCCAACAGTTGTAGGGGCACATCAGGGAAGTATTGTAGCTAAAGATACAAGAAATGTGATTCAACAAGACAATCCCAATTCTGAAGACAAAAGAGCACAATGA 1131 0.4324 MAQHNNANINNIVSQQQQLVKPMFHDFLGIKNKNPIDSNVLYAPNLHVTSSSSSLSSTTVSRGGATSDLASGLVGNKRNNSDSTFIGSSRDSFQMVPDSLQNSHLIKMLRNAAGTDCLRCPNDDEVLLGMQSLKPASGFQILQPPTGTKNDVNKWEQSILMNVGHSMQYLPHGGQILLFMDQITSSKMRDTNAGSSFISQLAADEGSRTGIKGTGILSSISTINAVTEKTSSILGGIRPKPVTNIDPESSTPLNRCGSASASCQITIFYGGQTHVFDDADVIMGLDGSNGGSWSTTFSTESFVKLHHYNNARNGENEIVIVSKIFSITSSSSHAIGPGDRLTTPTVVGAHQGSIVAKDTRNVIQQDNPNSEDKRAQ 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01945 376 PANTHER PROTEIN TIFY 8 69 375 - -
Gma17g01945 376 SMART tify_2 258 288 IPR010399 -
Gma17g01945 376 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 69 375 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01945 Gma-Chr17 34532316 34537869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01945 1 285 Tify Gene Family AT4G32570 33.837 5.04e-27 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Gma17g01945 tify 7.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01945 - - var:108319287 376.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01945 17 34532316 34537869 Gma04g00653 04 6030501 6037290 PCT
Gma17g01945 17 34532316 34537869 Gma06g00646 06 5853031 5860028 PCT
Gma04g00653 04 6030501 6037290 Gma17g01945 17 34532316 34537869 PCT
Gma06g00646 06 5853031 5860028 Gma17g01945 17 34532316 34537869 PCT