Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01942 ATGGTTAGAGAAAATGCTGTAATGGGTGGTGCCAGTGAAGAGCGTGGTGTTCGGGTCACTCGAGCAATGGCTAGAGCTGTTTTGGGTGGGGTCTCTGCCTCTTCTAGACCGTCCTTCAAGAAGCAACACAAGAACAACAAGGGTTTCGGTAGGGTAGCACTAGCAGATGTCACTAACATAAGCAAGAAAGGGTGTGCTACATCAAAATCTCAGGCAAGAGGAGGTTACAAGAAGACTAACACAAAGGGAGCTTCCAATGTCTCCATTCAAGTTTTGTCAACTCAAGAAGATGTTAGAGCAAAATTAGCAAAAGATTTACCCTCAATATCAATGGTACAGTCACATGACGCTAATGTAGCTGAAAGGCAGGAAGGCACAGAGGTAGTGCAACCTTCTATGTCTGTTATGGCAGGTCCTCTGCTTTCAATGCAGGACTCTATGAAGTCTGATGAAATCCTTCGCTCTCCAAACAAAGACGTTGATATGATGATTACTGAGAAACTAAAACTTTCAGATGGTTTGGACATTGTGGACATTGATTCAGTGGAGTTAAAGGATCCTCAAGTTTGGAGTTCATATGCCCCTGATATATACAATAGTATATTTGTCAGGGAGTTTGAAAGGAGACCGTCAAGTGATTACATGGATATGTTGCAGCAAGATATCACTCCAAGCATGCGAGGGATTCTGATTGATTGGCTTGTGGAGGTTTCTGAGGAATATAAGCTACTTCCAGATACTCTTTACCTTACAGTGAATCTGATTGATCGGTCTCTTTCTCAAAGTTTGGTTCAGAAACAAAGGCTCCAGTTGCTGGGTGTTACTTGCATGCTGATTGCATCAAAGTATGAAGAGATTTGTGCTCCTCGGGTGGAAGAATTTTGCTTCATCACAGATAATACGTACACAAAAGCAGAGGTATTGAAAATGGAGAGTGAGGTTCTAAATCTGTTGCATTTTCAGTTATCTGTTCCCACCACAAAAACATTTCTCAGGAGGTTCATCCTAGCATCACAATCTTCTTACAAGCTTCTTGCAGTTTCTACCTTCCTTGATAGCTGCATCTGCTGTATTACTCGCCAGATGGACCCTCAACCAATCAGAGCATCCATGGAATTCAACCATGGAACACTATACGAATTACAAAGTGTCAGAGCTTAA 1161 0.422 MVRENAVMGGASEERGVRVTRAMARAVLGGVSASSRPSFKKQHKNNKGFGRVALADVTNISKKGCATSKSQARGGYKKTNTKGASNVSIQVLSTQEDVRAKLAKDLPSISMVQSHDANVAERQEGTEVVQPSMSVMAGPLLSMQDSMKSDEILRSPNKDVDMMITEKLKLSDGLDIVDIDSVELKDPQVWSSYAPDIYNSIFVREFERRPSSDYMDMLQQDITPSMRGILIDWLVEVSEEYKLLPDTLYLTVNLIDRSLSQSLVQKQRLQLLGVTCMLIASKYEEICAPRVEEFCFITDNTYTKAEVLKMESEVLNLLHFQLSVPTTKTFLRRFILASQSSYKLLAVSTFLDSCICCITRQMDPQPIRASMEFNHGTLYELQSVRA 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01942 386 PIRSF Cyclin_A_B_D_E 11 353 IPR039361 -
Gma17g01942 386 Gene3D - 211 316 - -
Gma17g01942 386 PANTHER CYCLIN-A2-4 46 357 - -
Gma17g01942 386 Gene3D - 317 361 - -
Gma17g01942 386 PANTHER CYCLINS 46 357 IPR039361 -
Gma17g01942 386 CDD CYCLIN 226 315 IPR013763 -
Gma17g01942 386 SUPERFAMILY Cyclin-like 185 322 IPR036915 -
Gma17g01942 386 Pfam Cyclin, N-terminal domain 196 323 IPR006671 -
Gma17g01942 386 SMART cyclin_7 232 316 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01942 Gma-Chr17 34494048 34501005 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01942 3 344 Core Cell Cycle Gene Families AT5G25380 46.703 5.82e-90 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01942 K06627 - gmx:100805701 664.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01942 17 34494048 34501005 Gma14g01148 14 17874124 17879979 GST
Gma17g01942 17 34494048 34501005 Gma04g00655 04 6052030 6062268 PCT
Gma17g01942 17 34494048 34501005 Gma06g00648 06 5873339 5878539 PCT
Gma04g00655 04 6052030 6062268 Gma17g01942 17 34494048 34501005 PCT
Gma06g00648 06 5873339 5878539 Gma17g01942 17 34494048 34501005 PCT