Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01932 ATGAGAACTATGATGGTTTTGCTAGTGAAAGGAGAAGAGTTTGTTTTCCGTCAAATTGTAATAAAAGGTGGTTCAAGTTACACTTTGCCGTTGTTGATGGCACGACCTGGGAGCCTAAACGGCAGTCAGCATGTTATAGAAATAGCTGGGAGCGCCTATGCTTCCACATCGTCTGCATCACATCATGATAGACATTTTAATGGCACAGATGTGACGCAGCATGAAGAAAGAATTAGTGGTGCAAGGATGCCTCCTCTTTCTCAGCCTTCGGTTTCAGCAACTAGTGTATCTAATGGGTCAAATAGTAGGAATTCATCGTTTATAAGACGTGGGGATACTCGGCGGAATAGGAGTCCTGTGCATTCAGGGTTATGGATATCTATTGAGCTGGTCCTACTAGTGAGCCAGATTGTTGCGTCTATCATTGTTTTGTCTTTGTCAAGGCATGAACATCCACGTACCCCATTGTTTCATTGGATCATTGGTTATGCTTCTGGATGCGCTGCTACCCTCCCTCTGCTTTATTGGCGTTATTATCATCATAACCATATGCGAGAGCAAGATTCATCTCAATCAAGGCAATCATCTCCTCGGATTAATGATCCTTCAGGGACACTTCTTTTCAGTTCCAGAACTAACAGTGGAGAAGATGGTCAGGCTGCTGTTGCATCCTCCAGAAGCAATCAAGCTTCATTATTGATGAATAGAAGAATGAAGACACTAGTGGAATACTTCAAAATATCTTTAGATTGCTTTTTTGCTGTATGGTTTGTTGTTGGAAATGTATGGATCTTTGGGGGACATTCATCTGTTGAAGAAGCTCCTAATTTGTACAGGTTATGTATAGTGTTTCTTGCATTTAGCTGCATTGGTTATGCCATGCCCTTCATTCTCTGTTCAACAATCTGCTGTTGTCTCCCTTGTATAATTTCTATCCTTGGGGTTAGAGAGGATATGTCACAAAATAGAGGGGCAGCTTCCGAATCTATTAATGCTTTGCCAATTTACAAGTTCAAGACGAAGAAAAATAAAAGAAATGGTGATAGCAACTCAGCTGCTGCCGAAGGTGGAGTTGTGGCTGCAGGAACTGAAAAAGAGCGTGTGATATCTGGAGAAGATGCGGTTTGCTGCATCTGCCTGGCAAAGTATGAGAATAACGATGAGCTGAGAGAATTGCCTTGTTCTCATCTTTTCCACAAAGACTGCGTTGATAAATGGTTGAAGATAAATGCATTATGCCCTCTTTGCAAGAGTGATGTTGGTGAAAACTTAACCGGATCAGTCTCTGGAGAAGATGCCAGCCAACAACGGGGTGAGAGCAGGGTTGAGAATGGCCTCACGAATACCTCAGTCTAG 1356 0.4255 MRTMMVLLVKGEEFVFRQIVIKGGSSYTLPLLMARPGSLNGSQHVIEIAGSAYASTSSASHHDRHFNGTDVTQHEERISGARMPPLSQPSVSATSVSNGSNSRNSSFIRRGDTRRNRSPVHSGLWISIELVLLVSQIVASIIVLSLSRHEHPRTPLFHWIIGYASGCAATLPLLYWRYYHHNHMREQDSSQSRQSSPRINDPSGTLLFSSRTNSGEDGQAAVASSRSNQASLLMNRRMKTLVEYFKISLDCFFAVWFVVGNVWIFGGHSSVEEAPNLYRLCIVFLAFSCIGYAMPFILCSTICCCLPCIISILGVREDMSQNRGAASESINALPIYKFKTKKNKRNGDSNSAAAEGGVVAAGTEKERVISGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKSDVGENLTGSVSGEDASQQRGESRVENGLTNTSV 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01932 451 MobiDBLite consensus disorder prediction 427 451 - -
Gma17g01932 451 SMART ring_2 376 416 IPR001841 -
Gma17g01932 451 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 357 425 IPR013083 -
Gma17g01932 451 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 33 443 - -
Gma17g01932 451 MobiDBLite consensus disorder prediction 58 118 - -
Gma17g01932 451 MobiDBLite consensus disorder prediction 63 77 - -
Gma17g01932 451 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 33 443 - -
Gma17g01932 451 SUPERFAMILY RING/U-box 368 423 - -
Gma17g01932 451 ProSiteProfiles Zinc finger RING-type profile. 376 417 IPR001841 -
Gma17g01932 451 MobiDBLite consensus disorder prediction 85 107 - -
Gma17g01932 451 Pfam Ring finger domain 376 417 IPR001841 -
Gma17g01932 451 CDD RING-H2_RNF111_like 375 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01932 Gma-Chr17 33750710 33759561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01932 109 427 C3H Transcription Factor Family AT1G80400 58.204 9.51e-141 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01932 - - gmx:100785559 849.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01932 17 33750710 33759561 Gma17g01932 17 33750710 33759561 ECH