Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01930 ATGGGCAATCGGAAGACAGAAGAGGAAAGGATTGAAAGAGTAATTCGGAGTCTTTTAAAACTTCCCGAAAATAGAAGATGCATCAACTGCAATCTTTTGGGACCACAATATGTGTGTACAACTTTCTCGACTTTTGTCTGCACAAATTGCAGTGGAATACACCGAGAGTTTACACATAGAGTAAAATCTGTGTCAATGGCTAAATTTTCTCCAGAAGAAGTCACTGCTCTTCAAGCAGGTGGCAATGAGAGGGCAAAGCAGATTTATTTTAAAGAATGGAATCCTCTGCGCCATTCTCACCCCGAATCCGGTAATATACACAAACTTCGAGATTTCATTAAGCACGTATATGTGGAAAGAAGATATTCTGGTGAAAATTGTGGTAGCAGTCTTCCTAGAATTAAAATGAGTGAGAAGGAGGAGTCTTATGCAAGTAAGAAAAGTAGTTCATTTCGTTTTGAAATCATAAGTCCTCATTCATGCCCTGGTGCTAGTAGTGATGACAAGAATCTCAGATTTTTATATGATGAAAGCAGAAGTCCTAGATATACGCAAAAGTATTCTAGGAATGCCGGCCTGACCAAAAGTCCTATAAAAATTGAAGTTGTTGATGACAGGTTCCGAGACAAAGAACATAGAAATCGCAGGCTATCAAACATAGAATCAAAGTTAAAACAAATTTCAATTGATGATCAGAAGAATGTAGACAAATCACAACTTCCTGTTGCACGTCCTTCGGGAGAAATATTAAGGGAGAAAGCTTCATCTCTACAAGTCTCACATTCTGGTGGCAAGGGTTCTGTTGAGGAAAATCCATCTGAACAAAAAAATAATAATCCAGAAAGGTCCATTAATTTGAGTACTAAGTCTCAGCCTACTAATTCTGTTGCTGGAGGAGGACCAGAATCACCACCACATATAACACAATCAAATGAAAATAACTGGGCCATATTTGGAGCTTCAACAGAAAACAAGGATCCTAAATCTCCAAACACAAATACCTCAAAACCTTCTACAACAAATGCAGCATCTGAAGCAGCAACACCTGCTAAAAATCCTCTAGATCTTTTACTTTTCGAATTGTCAGGTCCTGTGACTCCAGTTACCGGTGAGATGTCACAAGCCGCAAGTGGTACTAATAATGATCCAACAACTACAACAGTAGATAATGCAAATATTTGGGACTTTCCACCTACTTCAGTAGGGAAGACAGGTCCATCCCCCAACAATACTAGTGTTTGGTCATCCACATTAACCCCAGCCACTGAGTCAGCACAACCTTCTAATGAAGTTCTTCCTCATTCTGAAGTTTCACATGCACATAAACCTTCAAGCATGCATTATCTTCCGTCCGTATCATCAGGTTGTAGTAAAACCACACCACTAATAAATTCACCAGTCAAAGATGTAGCCTCAAATAACCAGCTACCAGTTGCTCCTAGTACAAATAACTCTTCATGGGGTTTTACTGAACTATCTTCTCAAGCTACCTCAAAACCTACTCAAGAAACCAAACCTGATGCTGGCTCCCAGCTCAGTAAAGTGGAAACCAGGTCTAGTGGAAGAATGGAACTTCCAGAGGACCTTTTCACATCAAGCTACTTATCTGGCCCTGCATCACTTGCAGGTTGGCAGAATGTTCAACCTTATGGCATGGGATATGGCATGCAGTATTATCAAAATGCAGCGCCTCCCTCAGCCCTTCCAAATGCACCGAAGTACTCAAACCCCTTTGATGTAACTGATGGGAGAAGTTTAATGCATGTCTCATCGCTTCCTACTATGGAATCTTCGCACGGTGTACCTCCTCCGGCTGTATCACCCAGAACAGGATTAATGCATGCTTCATCAAGCCTTGGGTCTTTAGGGACAATGGTATCTCAGTCCCCATGTTATGCATCTCCAGTTCCCCTGGCTGAGTACCAAGTTAATAATAAGGAGCAACCCACAAG 1952 0.4114 MGNRKTEEERIERVIRSLLKLPENRRCINCNLLGPQYVCTTFSTFVCTNCSGIHREFTHRVKSVSMAKFSPEEVTALQAGGNERAKQIYFKEWNPLRHSHPESGNIHKLRDFIKHVYVERRYSGENCGSSLPRIKMSEKEESYASKKSSSFRFEIISPHSCPGASSDDKNLRFLYDESRSPRYTQKYSRNAGLTKSPIKIEVVDDRFRDKEHRNRRLSNIESKLKQISIDDQKNVDKSQLPVARPSGEILREKASSLQVSHSGGKGSVEENPSEQKNNNPERSINLSTKSQPTNSVAGGGPESPPHITQSNENNWAIFGASTENKDPKSPNTNTSKPSTTNAASEAATPAKNPLDLLLFELSGPVTPVTGEMSQAASGTNNDPTTTTVDNANIWDFPPTSVGKTGPSPNNTSVWSSTLTPATESAQPSNEVLPHSEVSHAHKPSSMHYLPSVSSGCSKTTPLINSPVKDVASNNQLPVAPSTNNSSWGFTELSSQATSKPTQETKPDAGSQLSKVETRSSGRMELPEDLFTSSYLSGPASLAGWQNVQPYGMGYGMQYYQNAAPPSALPNAPKYSNPFDVTDGRSLMHVSSLPTMESSHGVPPPAVSPRTGLMHASSSLGSLGTMVSQSPCYASPVPLAEYQVNNKEQPT 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01930 650 MobiDBLite consensus disorder prediction 402 433 - -
Gma17g01930 650 Pfam Putative GTPase activating protein for Arf 13 123 IPR001164 GO:0005096
Gma17g01930 650 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 141 IPR001164 GO:0005096
Gma17g01930 650 SMART arf_gap_3 12 129 IPR001164 GO:0005096
Gma17g01930 650 CDD ArfGap_AGFG 12 122 - -
Gma17g01930 650 MobiDBLite consensus disorder prediction 473 518 - -
Gma17g01930 650 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Gma17g01930 650 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Gma17g01930 650 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Gma17g01930 650 MobiDBLite consensus disorder prediction 253 347 - -
Gma17g01930 650 PANTHER ARFGAP/RECO-RELATED 1 640 IPR044820 GO:0005096
Gma17g01930 650 MobiDBLite consensus disorder prediction 473 524 - -
Gma17g01930 650 MobiDBLite consensus disorder prediction 399 457 - -
Gma17g01930 650 MobiDBLite consensus disorder prediction 253 351 - -
Gma17g01930 650 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Gma17g01930 650 PANTHER ARFGAP/RECO-LIKE ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 640 - -
Gma17g01930 650 MobiDBLite consensus disorder prediction 593 613 - -
Gma17g01930 650 Gene3D Arf GTPase activating protein 1 130 IPR038508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01930 Gma-Chr17 33679784 33688388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01930 12 89 C2H2 Transcription Factor Family AT4G05330 39.024 4.43e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01930 - - gmx:102670154 1199.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01930 17 33679784 33688388 Gma14g01157 14 18360409 18368512 GST