Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01916 ATGGGAGAAGTGGCAGTAATGCACTCTGAGCCTCTGCAGTTTGAGTGCAATGACATTAGTGTGAATATGACTGAGAAGGAAGTGTATCCTCCAGAATCAAATGTGGAGCGCTTACCTGGAGAAGAATCGAGTCAATCAACAGACCACAAAAATATCAATGACTTGCAAGAGAGAGGATATATGGAGTATGGATGTCAGCATTACCGGAGAAGATGCCGTATCAGGGCCCCATGTTGCAATGAGATTTTTGATTGCCGCCATTGTCATAATGAGGCAAAAAATGATATCAACATTGATCAGAAGCATAGACATGATATTCCACGACACCAAGTCAAACAGGTGATTTGTTCACTTTGTGGGACTGAACAAGAGGTTCAGCAAAACTGTATAAATTGTGGTGTTTGTATGGGCAAGTACTTCTGTGGAACATGCAAGCTTTTTGATGATGATATATCTAAGCAGCAGTACCATTGCAGTGGCTGTGGAATTTGCAGAACTGGAGGAAGCGAAAATTTCTTCCATTGCTACAAGTGTGGTTGTTGCTACTCAACTCTTCTGAAAAACAGTCACCCTTGTGTAGAAGGAGCAATGCATCATGATTGCCCGGTTTGTTTTGAGTATTTGTTTGAATCAAGAAATGATGTCACTGTTATGCCTTGTGGACATACAATCCATAAGAGCTGCCTGAATGAAATGAGAGAACATTTCCAGTATTCGTGCCCTCTCTGCTTGAAATCAGTCTGTGACATGTCAAAGGTTTGGGAGAAATTTGATATAGAGATTGCTGCTACACCAATGCCTGAGCAATATCAAAATAAAATGGTTTGGATCCTGTGCAACGATTGTGGTAAAACTTCTCACGTTCAGTTCCATTTTGTGGCTCAAAAGTGTCCGAACTGCAAATCCTACAATACACGACAAACATGA 927 0.411 MGEVAVMHSEPLQFECNDISVNMTEKEVYPPESNVERLPGEESSQSTDHKNINDLQERGYMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNDINIDQKHRHDIPRHQVKQVICSLCGTEQEVQQNCINCGVCMGKYFCGTCKLFDDDISKQQYHCSGCGICRTGGSENFFHCYKCGCCYSTLLKNSHPCVEGAMHHDCPVCFEYLFESRNDVTVMPCGHTIHKSCLNEMREHFQYSCPLCLKSVCDMSKVWEKFDIEIAATPMPEQYQNKMVWILCNDCGKTSHVQFHFVAQKCPNCKSYNTRQT 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01916 308 Gene3D - 272 308 - -
Gma17g01916 308 ProSiteProfiles Zinc finger CHY-type profile. 58 134 IPR008913 GO:0008270
Gma17g01916 308 SUPERFAMILY Zinc hairpin stack 137 194 IPR037275 -
Gma17g01916 308 Pfam Zinc-ribbon 248 306 IPR039512 -
Gma17g01916 308 Pfam CHY zinc finger 65 146 IPR008913 GO:0008270
Gma17g01916 308 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 24 308 - -
Gma17g01916 308 SMART ring_2 201 243 IPR001841 -
Gma17g01916 308 ProSiteProfiles Zinc finger CTCHY-type profile. 136 200 IPR017921 -
Gma17g01916 308 Pfam Ring finger domain 200 243 IPR001841 -
Gma17g01916 308 SUPERFAMILY CHY zinc finger-like 62 136 IPR037274 GO:0008270
Gma17g01916 308 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 24 308 - -
Gma17g01916 308 SUPERFAMILY RING/U-box 199 247 - -
Gma17g01916 308 ProSiteProfiles Zinc finger RING-type profile. 201 243 IPR001841 -
Gma17g01916 308 MobiDBLite consensus disorder prediction 28 51 - -
Gma17g01916 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 245 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01916 Gma-Chr17 33479893 33483248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01916 63 306 C2H2 Transcription Factor Family AT3G18290 39.600 4.75e-54 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01916 K10144 - gmx:100803569 689.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01916 17 33479893 33483248 Gma14g01168 14 18624489 18627752 GST
Gma17g01916 17 33479893 33483248 Gma06g00661 06 5982612 5985411 PCT