Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01909 ATGTTCTCCGGCTCCCAGTTCGACGCCACCACCGCCTTCTCCGGCGGCGGTTTCATGTCTTCTCAGCCGTCTACCCTCAACGATTCCTCTCCCGCGCCGTCAAAAAGCCGCGAAACTCAGGGTTTGGTGCCAGTGACAGTGAAGCAGATAAGCGAGGCCTCTCAATCCGGTGATGAAAAGTCGAATTTCGTGATCAACGGTGTAGATCTGAACAATGTAACACTGCTTGGGATGGTGTTTGAGAAAGTTGAGAGAAATACTGATGTCAATTTTGTTTTGGATGATGGAACAGGACGCATCAAATGTCGAAGATGGGTTAATGAGGCTTTTGACACAAAGGAAATGGAGGCAGTGATGAATGGTATGTATGTTCGTGTTTATGGGCATTTGAAAAGTTTTCAAGGTGTTAAGCAACTTGTCACCTTCTCCGCCAGGCCTGTCACAAATTTTGATGAGATCCCTTTTCACTTTATTGATTGCATACATAACCATCTTCGCTCCAAAATAAAGATGGAAGGAATCACTTCTTCAAATCCTTCATCTGGCTCATCTTTGAACACTCCTGGCAAAAGTGCACCAAATGGATCTCAGGCACCATCATCAAATCCAGTAAGTGCACAGCATAGCGTGGATGGACTTAAGGGTATTGATAAATTGATTATGGACTACCTGGAGCAGCATTCAGATATGTCAGATGGACGTGGAATACATGTTGATGAACTATCACGGGAGCTCAAGCTTCCAATGGAAAAGATCAAGTTGTCGTTGAAGACTCTTGCAGATGATGGAGAAATATACTCCACCATAGATGACGACCATTACAAAAAAGCTTGA 834 0.4436 MFSGSQFDATTAFSGGGFMSSQPSTLNDSSPAPSKSRETQGLVPVTVKQISEASQSGDEKSNFVINGVDLNNVTLLGMVFEKVERNTDVNFVLDDGTGRIKCRRWVNEAFDTKEMEAVMNGMYVRVYGHLKSFQGVKQLVTFSARPVTNFDEIPFHFIDCIHNHLRSKIKMEGITSSNPSSGSSLNTPGKSAPNGSQAPSSNPVSAQHSVDGLKGIDKLIMDYLEQHSDMSDGRGIHVDELSRELKLPMEKIKLSLKTLADDGEIYSTIDDDHYKKA 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01909 277 MobiDBLite consensus disorder prediction 173 209 - -
Gma17g01909 277 Pfam OB-fold nucleic acid binding domain 73 139 IPR004365 GO:0003676
Gma17g01909 277 SUPERFAMILY Nucleic acid-binding proteins 42 166 IPR012340 -
Gma17g01909 277 CDD RPA2_DBD_D 72 165 - -
Gma17g01909 277 SUPERFAMILY "Winged helix" DNA-binding domain 211 275 IPR036390 -
Gma17g01909 277 Pfam Replication protein A C terminal 179 272 IPR014892 -
Gma17g01909 277 PIRSF RPA32 1 277 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gma17g01909 277 PANTHER REPLICATION PROTEIN A-RELATED 1 277 IPR040260 -
Gma17g01909 277 MobiDBLite consensus disorder prediction 173 208 - -
Gma17g01909 277 MobiDBLite consensus disorder prediction 13 44 - -
Gma17g01909 277 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 1 277 - -
Gma17g01909 277 Gene3D - 38 168 IPR012340 -
Gma17g01909 277 Gene3D - 207 277 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01909 Gma-Chr17 33328089 33332223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01909 1 275 Core DNA Replication Machinery Family AT2G24490 49.281 1.44e-92 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01909 K10739 - gmx:100802512 551.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01909 17 33328089 33332223 Gma17g01909 17 33328089 33332223 ECH