Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01875 ATGGATGAGTATTCTCGTAAAAGAGGTGTAGATGGGATGGTATTCCCTAGAAAGGGGATGGGCCATGTATTTAGAGATACTGCTAATACTAGAGATCGAAATGGTCAAATTTGTAGTCGATTGGGTTGCAGTAGCAGAGCCAATCTTCCCAAAGTTGCTCACGTCAGATCTTCTGAAAAAGGTAAATCTTTGAGGCCTTCATTTCAGTCCTCTTCAAGTAGCAAGGATGCAATTGGAAGTTCCTCTAGAACTACTAGTTACCCAGCAAAACGACTTATAGAACCTCGGAAAACATTATCCTCTCAGTTTGAGGCACATTCATCTGAAACTAGTAGTGTACAGGACGGACCAGAATTTTCAGTGCCCATCCCTCCAACAGAAGAAATTCGGAGAGGGCCTCTAGTTGAAGGAGAAAGTACAGAGTCTAGTAATGCAATATTGATGGAAGTAGGAAGTTCCAGTGCAGTATCAAATACTAGATCTCAAAGAGCTGGATTGCGTGCGCAAGAAATTAAAAGCACTGGTGCAGTGAGGCGGGCTGTTTCCAGCAGGTATGGGTTGAGAAACCTCAAATGCAACTCTATATCTGACGTCGTCCCAGCTGGTTGTTCACCGTTGGATTCAAGCCTTAATAGAAGGAAGGATACAATAAAAAAGGGAAACTGTGAAGGGGGAAATAGTTCCACTGTTAGGGGGAAAAATATCACTGGGTCTTCACTGGAAGGACGGAATTCTGGCTCCAGAAATGGCATATCTATATCCGATTCAAGAAGATCTAGAAATGTTCCTTCTCACCGGAGCACCAGCGTGGCATCAGTAAGAACTCAAAGATCAATTAGTGGTCAAGCCAGGGGAAGGTTTTGTAGCCAAGGAAACGAAAACCCTGTGGCAAGCAGTGATTCCCCTCTTAACATTCCCCTTTCACCTCATTCTGGTGATCTTGATGCTCCTGGCTTTTCATATCATACTTCTATGGAGACTCCTCTAAGTGGCTCAAGCTCTTATGGTAGACCAGGCAATAGCAGTGAGCAGTTAAGTGGTGTTATGCCTGCATCTCCTGCAGAAGATGACAACACTCATTCTCTAATAAATAGGGATAGCTTTCGACATTACAACATGGGTGGTATTGCAGAGgtgttattggcacttgagaggattgaacaagatgcagagctaacccatgagcaaattcttttgttggaggccaacttgttcctcagtggattaaacttttatgatcaccacagagacatgcggttggatattgataacatgtcctatgaggaacttttagctctagaagagagaatgggaactgtgagcaccgctctgccggaggaagcacttGCAGAATGTCTGAAAAGAAGTAAATATCAGTCTGCACCTTTAGATGATGCAGATGAGAGTTGTAATGAGGATAAGGATGATATCAAATGCTGCATTTGCCAGGAGGAATATGTTGTTGGAGATGAAGTTGGGGATCTGCAATGTGAACATAGATTTCATGTGGTTTGCATACAGGAGTGGATGCGGCTTAAGAACTGGTGCCCTGTTTGTAAAATACAGATGCTCCTCACCTCATCTTATTGA 1590 0.3748 MDEYSRKRGVDGMVFPRKGMGHVFRDTANTRDRNGQICSRLGCSSRANLPKVAHVRSSEKGKSLRPSFQSSSSSKDAIGSSSRTTSYPAKRLIEPRKTLSSQFEAHSSETSSVQDGPEFSVPIPPTEEIRRGPLVEGESTESSNAILMEVGSSSAVSNTRSQRAGLRAQEIKSTGAVRRAVSSRYGLRNLKCNSISDVVPAGCSPLDSSLNRRKDTIKKGNCEGGNSSTVRGKNITGSSLEGRNSGSRNGISISDSRRSRNVPSHRSTSVASVRTQRSISGQARGRFCSQGNENPVASSDSPLNIPLSPHSGDLDAPGFSYHTSMETPLSGSSSYGRPGNSSEQLSGVMPASPAEDDNTHSLINRDSFRHYNMGGIAEVLLALERIEQDAELTHEQILLLEANLFLSGLNFYDHHRDMRLDIDNMSYEELLALEERMGTVSTALPEEALAECLKRSKYQSAPLDDADESCNEDKDDIKCCICQEEYVVGDEVGDLQCEHRFHVVCIQEWMRLKNWCPVCKIQMLLTSSY 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01875 529 Coils Coil 383 403 - -
Gma17g01875 529 MobiDBLite consensus disorder prediction 221 306 - -
Gma17g01875 529 SMART ring_2 479 519 IPR001841 -
Gma17g01875 529 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 443 524 IPR013083 -
Gma17g01875 529 ProSiteProfiles Zinc finger RING-type profile. 479 520 IPR001841 -
Gma17g01875 529 MobiDBLite consensus disorder prediction 216 361 - -
Gma17g01875 529 Pfam Ring finger domain 478 520 IPR001841 -
Gma17g01875 529 MobiDBLite consensus disorder prediction 100 117 - -
Gma17g01875 529 MobiDBLite consensus disorder prediction 62 88 - -
Gma17g01875 529 MobiDBLite consensus disorder prediction 52 128 - -
Gma17g01875 529 MobiDBLite consensus disorder prediction 323 348 - -
Gma17g01875 529 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 523 IPR045191 GO:0061630
Gma17g01875 529 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 523 - -
Gma17g01875 529 SUPERFAMILY RING/U-box 473 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01875 Gma-Chr17 32508736 32511911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01875 376 526 C3H Transcription Factor Family AT2G15530 42.384 1.33e-36 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01875 - - gmx:100803211 1030.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01875 17 32508736 32511911 Gma14g01220 14 19795388 19798796 GST
Gma17g01875 17 32508736 32511911 Gma04g00687 04 6402920 6407349 PCT
Gma17g01875 17 32508736 32511911 Gma06g00681 06 6180927 6185382 PCT
Gma04g00687 04 6402920 6407349 Gma17g01875 17 32508736 32511911 PCT
Gma06g00681 06 6180927 6185382 Gma17g01875 17 32508736 32511911 PCT