Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01832 ATGAAAACTAAAGGAAATGAGTTTGAGGATTACTTTTTGAAGCGTGAGTTGCTCATGGGAATATATGCGAAGGGTTTTGAAAGGCCTTCTCCCATCCAAGAAGAAAGCATTTCGATTGCTTTTACTGGTAGTGACATTCTTGCTAGGGCTAAGAACGGAACTGGCAAAACAGCTGCATTTTGCATTCCTGCATTGGATAAAATTGACCAGGACAATAATACTTCTCAAGTGTGCAAAGAGCTTGGAAAGCACTTGAAAATTCAAGTTATGGTTACAACAGGTGGTACCAGCCTGAAAGATGATATAATGTTCTTATATCAACCAGTTCATTTACTAGTTGGAACTCTAGGAAGAATATTAGATCTTGCCAAGAAAGGTGTTTGTATTCTGAAAGATTGTGCTATGCTTGTTATGGATGAGGCCGATAAGCTTATGTCCCCAGAGTTTCAACCTTCTATAGAGCAGCTGATTCATTTTCTTCCTACAACTCGTCAAATCTTGATGTTTTTAGCAACATTTCCTGTTACTGTAAAGGATTTCAAGGATAGGTATCTTCGAAAACCTTATGTATTCGTGGAAGAGAGACAGAAAGTCCACTGTCTAAATACTCTTTTTTCTAAGCTGCAAATAACCCAGTCTATCATCTTCTGCAATTCAGTAAATCGGGTTGAACTCCTTGCCAAGAAAATCACAGAACTTGGGTATTCATGTATCTACATTCATGCAAAGATGTTGCAAGACCATCGTAACAGAGTGTTTCATGACTTCCGCAATGGCGCATGTCGAAATCTTGTTTGTACTGGTACACTGCTGACACTTTAG 822 0.3869 MKTKGNEFEDYFLKRELLMGIYAKGFERPSPIQEESISIAFTGSDILARAKNGTGKTAAFCIPALDKIDQDNNTSQVCKELGKHLKIQVMVTTGGTSLKDDIMFLYQPVHLLVGTLGRILDLAKKGVCILKDCAMLVMDEADKLMSPEFQPSIEQLIHFLPTTRQILMFLATFPVTVKDFKDRYLRKPYVFVEERQKVHCLNTLFSKLQITQSIIFCNSVNRVELLAKKITELGYSCIYIHAKMLQDHRNRVFHDFRNGACRNLVCTGTLLTL 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01832 273 SMART ultradead3 25 210 IPR014001 -
Gma17g01832 273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 191 IPR027417 -
Gma17g01832 273 Pfam DEAD/DEAH box helicase 31 70 IPR011545 GO:0003676|GO:0005524
Gma17g01832 273 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 137 145 IPR000629 -
Gma17g01832 273 Gene3D - 75 188 IPR027417 -
Gma17g01832 273 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 184 273 IPR001650 -
Gma17g01832 273 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 37 191 IPR014001 -
Gma17g01832 273 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 6 3 268 - -
Gma17g01832 273 Pfam DEAD/DEAH box helicase 73 179 IPR011545 GO:0003676|GO:0005524
Gma17g01832 273 Pfam Helicase conserved C-terminal domain 199 267 IPR001650 -
Gma17g01832 273 CDD DEADc_DDX6 8 189 - -
Gma17g01832 273 Gene3D - 189 271 IPR027417 -
Gma17g01832 273 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 6 34 IPR014014 GO:0003724
Gma17g01832 273 Gene3D - 1 74 IPR027417 -
Gma17g01832 273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 269 IPR027417 -
Gma17g01832 273 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 3 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01832 Gma-Chr17 29419213 29421258 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01832 8 270 Eukaryotic Initiation Factors Gene Family AT3G13920 32.550 1.31e-46 159