Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01822 ATGGAATCACCCAGCTCTTCCCCAATTTTCCCACAATTCACCTTCGACAACAACAACTCCGACCACTTCATCGTGGAGGACCTCTTGGACTTCTCCAACGATGACGTTGTCATCACCGATGCCACCTTTGACTCCATCACTACTGACTCTTCCACCGTCACCACCACCGTCCACAGCTGCAACTCCTCCTCCTTCTCTGGCTCCGACCCCAATACCGTCCCTGATATTGGTAGCCGGAATCTCTCCGATGGCCATTTTTCTGATGACCTCTGCGTTCCGTATGATGACATAGCGGAGTTAGAATGGCTTTCGAATTTCGTGGAGGAGTCGTTTTCGAGCGAGGACTTGCATAAGATGCAGCTGATATCAGGCATGAATGCGCAAAACAACGACGTATCAGAGGCCCGCGAGTTCCACTACGAGCCCACCACCACTAGAAGCGGGTCCCACACCCCAGAGCCCACCAGAAACAGCCCAATATTCAATTCGGAAGTGTCGGTTCCAGCCAAGGCCCGCAGCAAGAGGTCCCGTGGGCCCCCTTGCAACTGGGCATCGCGCCTCCTGGTCCTGTCCCCAACGTCGTCGTCCTCGGATAACGAGGTCGTCGTTCCATCTCCCGCCACTGCCGAACCCTGTCCGACTCCGGCGAAAAAAATGGCAAAGGTCGGGCCGAGGAAGAAGGACAGTAGCAGCAGTGACGGAAACGGCAGTGGTGGGGACGGGCGCAGGTGCTTGCACTGCGCCACGGACAAGACCCCGCAGTGGCGGACCGGGCCCATGGGCCCGAAGACTCTCTGCAACGCTTGTGGCGTGAGGTACAAGTCGGGCCGGCTGGTGCCCGAGTACAGGCCCGCGGCAAGCCCAACATTTGTTCTGACTAAGCACTCCAACTCGCACCGCAAGGTGCTGGAGCTGCGAAGGCAGAAGGAAATGGTGCGGTCCCAGCAACACCACCACCAGCATCAACAACAGTTTCTACAACACCACCACCATAACCATCACCACTATCAACATCACCAGAACATGATGTTTGATGTATCCAACGGTGACGATTACTTGATCCACCAATACGTGGGCCCCGATTTCAGGCAGCTTATCTAG 1101 0.5631 MESPSSSPIFPQFTFDNNNSDHFIVEDLLDFSNDDVVITDATFDSITTDSSTVTTTVHSCNSSSFSGSDPNTVPDIGSRNLSDGHFSDDLCVPYDDIAELEWLSNFVEESFSSEDLHKMQLISGMNAQNNDVSEAREFHYEPTTTRSGSHTPEPTRNSPIFNSEVSVPAKARSKRSRGPPCNWASRLLVLSPTSSSSDNEVVVPSPATAEPCPTPAKKMAKVGPRKKDSSSSDGNGSGGDGRRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVRSQQHHHQHQQQFLQHHHHNHHHYQHHQNMMFDVSNGDDYLIHQYVGPDFRQLI 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01822 366 ProSitePatterns GATA-type zinc finger domain. 244 269 IPR000679 GO:0006355|GO:0043565
Gma17g01822 366 MobiDBLite consensus disorder prediction 194 245 - -
Gma17g01822 366 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 239 302 - -
Gma17g01822 366 Gene3D - 239 288 IPR013088 GO:0006355|GO:0008270
Gma17g01822 366 SMART GATA_3 238 288 IPR000679 GO:0006355|GO:0043565
Gma17g01822 366 PANTHER GATA TRANSCRIPTION FACTOR 18 366 - -
Gma17g01822 366 Pfam GATA zinc finger 244 277 IPR000679 GO:0006355|GO:0043565
Gma17g01822 366 ProSiteProfiles GATA-type zinc finger domain profile. 238 274 IPR000679 GO:0006355|GO:0043565
Gma17g01822 366 PANTHER GATA TRANSCRIPTION FACTOR 18 366 - -
Gma17g01822 366 MobiDBLite consensus disorder prediction 144 164 - -
Gma17g01822 366 MobiDBLite consensus disorder prediction 141 179 - -
Gma17g01822 366 CDD ZnF_GATA 243 290 IPR000679 GO:0006355|GO:0043565
Gma17g01822 366 PIRSF Txn_fac_GATA_plant 9 334 IPR016679 GO:0003677|GO:0005634|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01822 Gma-Chr17 29250229 29251928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01822 23 366 C2C2-Gata Transcription Factor Family AT5G25830 51.532 4.85e-98 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gma17g01822 GATA 3.4e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01822 - - gmx:100784144 668.692