Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01800 ATGATATCACCTAATGTGGTGTCCTGGACTGCTATGATATCAGGCAGTTGTGAAAATGAGAACTACATGGATGCCCTACAGTTTTTCATCCAAATGCAAGAAGAAAATGAGAAGAGATACACTGCTCTTCTATCTGGCTGCAAGAATTCAGGTTTAGTTATGGATGGGTGGAAGTACTTCGACAACATCAAGATAGATTACAATATTAATCCAACAATTGAGCACTACTCTTGCATGGTAGATCTTCTTGGAAAAGCTGGGTTTCTTGATGAAGCTTTGGATTTCATTCGCGCCATGCCACAAAAGGTAGATACTAGTATTTGGGGTGTTGTTCTTGCAGCCTGCAAACTTCACAAAGACATTAAGATAGCGGAGATTGCCGCTAGGAATCTCTTAAGGCCAAATCCTTTGCTAAGAAGTCAAAATTCGAACAAGCACTATTTTAAGAGGGGCAATGGGATACATTGCAGTAGCTCTAAGGGTTGCTCTGCGAGGAAGCAACTTGAGAGGAGCAAGAATGATTCAAACATGTTGGTTATCACATACACATCAGAGCATAACCATCCATGGCCAACTCAAAGAAATGCTCTGCCTAGTTCAACAACATCACAACCATCCAAGCACAACAACAATGTTGCTTCCAATTCAAAGAATTCAGAAGGCTGA 666 0.4099 MISPNVVSWTAMISGSCENENYMDALQFFIQMQEENEKRYTALLSGCKNSGLVMDGWKYFDNIKIDYNINPTIEHYSCMVDLLGKAGFLDEALDFIRAMPQKVDTSIWGVVLAACKLHKDIKIAEIAARNLLRPNPLLRSQNSNKHYFKRGNGIHCSSSKGCSARKQLERSKNDSNMLVITYTSEHNHPWPTQRNALPSSTTSQPSKHNNNVASNSKNSEG 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01800 221 Pfam WRKY DNA -binding domain 155 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma17g01800 221 Pfam PPR repeat 75 101 IPR002885 -
Gma17g01800 221 Pfam PPR repeat 40 63 IPR002885 -
Gma17g01800 221 MobiDBLite consensus disorder prediction 184 221 - -
Gma17g01800 221 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 40 136 - -
Gma17g01800 221 PANTHER OS05G0586900 PROTEIN 2 36 - -
Gma17g01800 221 PANTHER OS05G0586900 PROTEIN 40 136 - -
Gma17g01800 221 Gene3D Tetratricopeptide repeat domain 36 134 IPR011990 GO:0005515
Gma17g01800 221 ProSiteProfiles WRKY domain profile. 113 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma17g01800 221 Gene3D WRKY domain 135 192 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gma17g01800 221 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 2 36 - -
Gma17g01800 221 Pfam PPR repeat 2 32 IPR002885 -
Gma17g01800 221 TIGRFAM PPR: pentatricopeptide repeat domain 7 36 IPR002885 -
Gma17g01800 221 TIGRFAM PPR: pentatricopeptide repeat domain 76 99 IPR002885 -
Gma17g01800 221 SMART WRKY_cls 140 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma17g01800 221 SUPERFAMILY WRKY DNA-binding domain 155 191 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gma17g01800 221 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 5 39 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01800 Gma-Chr17 27307703 27309954 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01800 5 136 Glycoside Hydrolase AT3G49170 42.647 2.84e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gma17g01800 WRKY 2.7e-08 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01800 - - gmx:100801069 172.94