Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01798 ATGTGCTTAGTAGCAGCTGCTGCTGCACTTTGTGCTTTCATTGCTCCAGCAACTGTAGGCTCTGGCATTCCAGAGGTAAAAGCATATCTCAATGGCGTCGATGCTCAAAATATATTGGCTCCAAGCACCCTTTTTGTAAAGGGTGGATCTCCCAAGTATCACTTGACTTGCACTTGGCTTAGATGTTTCAAAAATGACCGAGACTGGCGGGGCATGATTACTTGTGGGTTACTGCCGGTGTTGCTGTCGCTTTTCGTGCACCAGTAG 267 0.4757 MCLVAAAAALCAFIAPATVGSGIPEVKAYLNGVDAQNILAPSTLFVKGGSPKYHLTCTWLRCFKNDRDWRGMITCGLLPVLLSLFVHQ 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01798 88 Pfam Voltage gated chloride channel 4 47 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gma17g01798 88 Gene3D Clc chloride channel 1 50 - -
Gma17g01798 88 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 47 76 - -
Gma17g01798 88 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 1 47 - -
Gma17g01798 88 SUPERFAMILY Clc chloride channel 2 76 IPR014743 -
Gma17g01798 88 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 47 76 - -
Gma17g01798 88 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 1 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01798 Gma-Chr17 27275102 27276272 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01798 1 76 Ion Channels AT5G49890 53.211 3.32e-28 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01798 K05016 - gmx:100777170 121.324