Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01787 ATGGGTTTTCGCAACACAATCGGTCCACAGAAGCATCAAGCAGTGGCACTAATGACAAGCTCAGATCAAGTAGTTTACTATAGATGTCACATTGATGCATATCAGAACACTCTCTATGCTCATTCCAACTGCCAATTCTATAGAGAATGCAACATCTATGGCACTATTGATTTCATTTTCGGGAATTTTGCGGTTGTCATCCAAAACTGCAACATTAGGCCAAAGCTACCTATGCATGACCAGATCAACACAATCACAGCTCAGGAAAAAACTGACCCTAACATGAACACTGGAATCTCCATTCAACATTGCAACATTTCACCCTTTGGAAACTTGAGTTCTGTCGAGACATACCTTGGAAGACCCTGGAAGAACTACTCAACCACACTGTACATGAGATCAAGGATGGATGGCCTTGTGAGCCCCAGAGGCTAG 435 0.4299 MGFRNTIGPQKHQAVALMTSSDQVVYYRCHIDAYQNTLYAHSNCQFYRECNIYGTIDFIFGNFAVVIQNCNIRPKLPMHDQINTITAQEKTDPNMNTGISIQHCNISPFGNLSSVETYLGRPWKNYSTTLYMRSRMDGLVSPRG 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01787 144 Gene3D - 1 144 IPR012334 -
Gma17g01787 144 Pfam Pectinesterase 1 144 IPR000070 GO:0030599|GO:0042545
Gma17g01787 144 PANTHER PECTINESTERASE 1 144 - -
Gma17g01787 144 ProSitePatterns Pectinesterase signature 2. 52 61 IPR033131 -
Gma17g01787 144 SUPERFAMILY Pectin lyase-like 2 143 IPR011050 -
Gma17g01787 144 PANTHER PECTINESTERASE 1 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01787 Gma-Chr17 25834764 25835198 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01787 1 144 Carbohydrate Esterase AT3G10710 63.194 1.29e-65 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01787 - - gmx:100811152 279.256