Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01751 ATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCCATCCAAGAAGAAAGCATTCCGATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCTAAGAACGAAACTGGCAAAACAGCTGCATTTTGCATTCCTGCATTGGAAAAAATTGACCAGGACAATAATGTTATTCAAGTTGTTATACTGGTCCCAACCCGAGAATTGGCATTGCAGACTTCTCAAGTGTGCAAAGAGCTTGGAAAGCACTTGAAAATTCAAGTTATGGTTACAACAAGTGGTACCAGTCTGAAAGATGATATAATGTGCTTATATCAACCAGTTCATTTACTAGTTGGAACTGCAGGAAGAATATTAGATCTTGCCAAGAAAGGTGTTTGTATTCTGAAAGATTGTGCTATGCTTGTTATGGATGAGACCGATAAGCTTCTGTCCCCAGAGTTTCAACCTTCTATAGAGCAACTGATTCATTTTATTCCTACAACTCGTCAAATCTTGATGTTTTCAGCAACATTTCCTGTTACTGTAAAGGATTTCAAGGATAGGTATCTTCGAAAACCTTATGTATTCGTGGAAGAGAGACAGAAAGTCCACTGTCTAAATACTCTTTTTTCTAAGCTGCAAATAAACCAGTCTATCATCTTCTGCAATTCAGTAAATCGGGTTGAATTCCTTGCCAAGAAAATCACAGAACTTGGGTATTCATGTTTCTACATTCATGCAAAGATGTTGCAAGACCATCGTAACAGAGTGTTTCATGACTTCCGCAATGGCGCATGTCGAAATCTTGTTTGTACTGGTACGCTGCTGACACTTTAG 816 0.3897 MGIYEKGFERPSPIQEESIPIALTGSDILARAKNETGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTSGTSLKDDIMCLYQPVHLLVGTAGRILDLAKKGVCILKDCAMLVMDETDKLLSPEFQPSIEQLIHFIPTTRQILMFSATFPVTVKDFKDRYLRKPYVFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVEFLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTGTLLTL 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01751 271 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 19 189 IPR014001 -
Gma17g01751 271 CDD SF2_C_DEAD 187 265 - -
Gma17g01751 271 Pfam Helicase conserved C-terminal domain 197 265 IPR001650 -
Gma17g01751 271 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 1 266 - -
Gma17g01751 271 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 6 1 266 - -
Gma17g01751 271 Gene3D - 1 186 IPR027417 -
Gma17g01751 271 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 189 IPR027417 -
Gma17g01751 271 Pfam DEAD/DEAH box helicase 13 177 IPR011545 GO:0003676|GO:0005524
Gma17g01751 271 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 182 271 IPR001650 -
Gma17g01751 271 CDD DEADc_DDX6 1 187 - -
Gma17g01751 271 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 267 IPR027417 -
Gma17g01751 271 SMART ultradead3 7 208 IPR014001 -
Gma17g01751 271 Gene3D - 187 269 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01751 Gma-Chr17 24284856 24286851 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01751 2 265 Eukaryotic Initiation Factors Gene Family AT3G19760 31.802 5.51e-52 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01751 K12614 - gmx:106794117 506.138