Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01695 ATGAGAACATTCGCCTGCTCTATGACACTAAAGGCCGATTCCGTCTTCATTCCATCAGGGATGATGAGGCAAAGTTCAAGCTCTGCAAGGGCCAATGACACTGTTAAGCTGGATCTGGAGAAAACAAGATTGTCAATTTTTATCAAATTTGATGTTGGGAATGTAGTTATGGTAACAGGTGGAAGAAACAGGGGGTGTGTTGGAGTGATCAAGAATAGGGAGAAGCATAAGGGTAGCTTCAAGACAATTCATGTGCAAGATGCAACTGGGCATGAATTTGCTTCTCGTATGGGCAATGTGTTCACTATTGGCAAGGGGACAAAGCCATGGATATCCCTAGCCAAGGGTAAGGGTATTAAGCTGGGTTCAAATTCTGTTAACATTCTAGTTCCTATAGATTGTAGTCCCAAAGGGAAGTTGGTTGAGATGAACACTCAGTGTGCACATGCAGACAATGGATGTGGAAGTTGCAGCTATGAAGATAATTCCATGAATGAGCCTATACTTAATAGCAAACTTGAAGCTGTAACATATGTATGA 540 0.4204 MRTFACSMTLKADSVFIPSGMMRQSSSSARANDTVKLDLEKTRLSIFIKFDVGNVVMVTGGRNRGCVGVIKNREKHKGSFKTIHVQDATGHEFASRMGNVFTIGKGTKPWISLAKGKGIKLGSNSVNILVPIDCSPKGKLVEMNTQCAHADNGCGSCSYEDNSMNEPILNSKLEAVTYV 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01695 179 Pfam 40S ribosomal protein S4 C-terminus 87 121 IPR032277 -
Gma17g01695 179 CDD KOW_RPS4 50 104 IPR041982 -
Gma17g01695 179 Gene3D - 50 120 IPR014722 -
Gma17g01695 179 PANTHER 40S RIBOSOMAL PROTEIN S4 26 122 - -
Gma17g01695 179 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 26 122 IPR000876 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01695 Gma-Chr17 22130435 22131319 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01695 22 121 Cytoplasmic Ribosomal Protein Gene Family AT5G07090 75.000 5.51e-52 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01695 K02987 - gmx:100811336 169.088