Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01692 ATGAGGGAAGCACAAACCATCATCCAAGGCAAGTGCCCCATAAGAGTAAAAATAACAGCCATTATAAAAAATGCTGTTTCAATCCCAAAAACAAATGAGAACTTCCGCCTGCTCTATGACACTAAAGGCCGATTCCGTCTTCATTCCATCAGGGATGATGAGGCAAAGTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCCGAAAGGTATCCCATACCTAAACACCTATGATGGTCGCACCTCCATTACCCGAACCCTCTCATCAGGGCTAATGACACTGTTAAGCTGGATCTGGAGGAAAACAAGATTGTCAATTTTTATCAAATTTGATGTTGGGAATGTAGTTATGGTAACAGGTGGAAGAAACAGGGGGCGTGTTGGAGTGATTAAGAATAGGGAGAAGCATAAGGGTAGCTTTCATGTGCAAGATGCCACTGGGCATGAATTTGCTACTTGTATGGGCAATGTGTTCACTATTGGCAAGGGGACAAAGCCATGGATATCCCTGCCCAAGGGTAAGGGTATTAAGCTGGGTTCAAATTCTGTTAACATTCATGTTCCTATAGATTGTAGTCCTAAAGGGATGTTGGTTGAGATGAACACTCAGTGTGCACATGCAGACAATGGATGTGGAAGTTGCAGTTGTGAAGATAATGCCATGAATGAGCCTATACTTAATAGCAAACTTGAAGCTGTAACATATGTATGA 714 0.4286 MREAQTIIQGKCPIRVKITAIIKNAVSIPKTNENFRLLYDTKGRFRLHSIRDDEAKFKLCKVRSVQFGPKGIPYLNTYDGRTSITRTLSSGLMTLLSWIWRKTRLSIFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFHVQDATGHEFATCMGNVFTIGKGTKPWISLPKGKGIKLGSNSVNIHVPIDCSPKGMLVEMNTQCAHADNGCGSCSCEDNAMNEPILNSKLEAVTYV 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01692 237 Pfam KOW motif 113 142 IPR005824 -
Gma17g01692 237 PANTHER 40S RIBOSOMAL PROTEIN S4 108 153 - -
Gma17g01692 237 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 26 82 IPR000876 GO:0003735|GO:0005840|GO:0006412
Gma17g01692 237 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 108 153 IPR000876 GO:0003735|GO:0005840|GO:0006412
Gma17g01692 237 PANTHER 40S RIBOSOMAL PROTEIN S4 26 82 - -
Gma17g01692 237 Gene3D - 111 178 IPR014722 -
Gma17g01692 237 Gene3D - 1 53 IPR036986 GO:0003723
Gma17g01692 237 PANTHER 40S RIBOSOMAL PROTEIN S4 155 179 - -
Gma17g01692 237 SMART kow_9 110 137 IPR005824 -
Gma17g01692 237 Gene3D - 58 84 IPR038237 -
Gma17g01692 237 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 155 179 IPR000876 GO:0003735|GO:0005840|GO:0006412
Gma17g01692 237 Pfam Ribosomal family S4e 31 86 IPR013845 -
Gma17g01692 237 CDD KOW_RPS4 111 162 IPR041982 -
Gma17g01692 237 Pfam 40S ribosomal protein S4 C-terminus 145 179 IPR032277 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01692 Gma-Chr17 21998666 22000619 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01692 24 179 Cytoplasmic Ribosomal Protein Gene Family AT5G07090 74.843 3.21e-81 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01692 K02987 - gmx:100811336 226.483