Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01682 ATGACAAGCTCATGGAGGAGCTCCGCATGTGCCCCCTGGACGATGTCGACGATTGGGACTTCGAGGACATTAACTATAATGATGAGGAGATCAACGATTTGTACAACGCTGACAGAGACATTCCAGGCATCGACTCTGATGTCTTTTCTGCCTCCTCAGGAAAACCCCAACTTTGTCAATCCCCAACTTCTCTTTCCTCTTCTTTATAGCTCTCAGCAGATACCTATCCCACCACTATGTTCTTCGTCAAAAAGGAGTAGAGCTGTAGAGTTCCATAATTTGTATGAAAAGAGAAGGAGGAGTAGGATTAAGGAGAAAATGAAAGCCTTGCAGAATTTAATTCCAAATTCCAACAAGACAAACAAAGCTTTAATGCTAGATGAGGCCATAGAATATTTAAAGCAACTCCAACTTCAAGAGCAAGGATTTATAGCCACATTATACTATGTAGAGGAATTATCTCTCCCTCCATCCCTCCCTCCCGTGTTGGCCTTCTTCTTCCTCCTCACCCCTCACCATTTTTTCTTCTTCTTCCTGACCCCTTACCTCACCTCACTCGCGTTCTTCTTCCTTTCACTCTACCCTGGTCTCAAAAAAGCTTCACCCACCATCGTCATCCTCCACGCCGTGTTTGTTCCCCCCGTGAGTGTCGTCTTCTTCCTCCGTGTCGGGAGTCCGTGTTCTGCAACCGCGCCGCCATTGATGTTGAGTAGCCCAGGAAAATTGAGGGTGGTGTTCTCCCTCCGCGCGTCGGCATTGTTGAGGTAA 768 0.4701 MTSSWRSSACAPWTMSTIGTSRTLTIMMRRSTICTTLTETFQASTLMSFLPPQENPNFVNPQLLFPLLYSSQQIPIPPLCSSSKRSRAVEFHNLYEKRRRSRIKEKMKALQNLIPNSNKTNKALMLDEAIEYLKQLQLQEQGFIATLYYVEELSLPPSLPPVLAFFFLLTPHHFFFFFLTPYLTSLAFFFLSLYPGLKKASPTIVILHAVFVPPVSVVFFLRVGSPCSATAPPLMLSSPGKLRVVFSLRASALLR 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01682 255 PANTHER TRANSCRIPTION FACTOR SPATULA 7 142 - -
Gma17g01682 255 CDD bHLH_AtPIF_like 87 143 - -
Gma17g01682 255 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 87 136 IPR011598 GO:0046983
Gma17g01682 255 Gene3D - 82 143 IPR036638 GO:0046983
Gma17g01682 255 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 7 142 IPR031066 -
Gma17g01682 255 Pfam Helix-loop-helix DNA-binding domain 91 137 IPR011598 GO:0046983
Gma17g01682 255 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 84 151 IPR036638 GO:0046983
Gma17g01682 255 SMART finulus 93 142 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01682 Gma-Chr17 21283292 21285592 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01682 87 141 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 85.455 4.62e-24 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma17g01682 HLH 3.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01682 - - gmx:100785332 112.849