Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01680 ATGATCCAAGAATTGTTGGGTGGTGCCCTCATAGCAGGAGAAAGAAAACCTTCCTCCATTAATGGAGGAGGTGGAGGAGGAGGAGTTTTACTCCCAATTACTACACCTTCTCCTTCTTCTTTTCCCTCTTCCACGACCAGTGATGTTACCCTCACATCCACAACAACAactgctgctactactgctgctactgctgctactactactactgctgTCGAAAACCTGAGATGTCCTCGATGTGATTCATCGAACACCAAGTTTTGTTACTACAACAACTACAACCTCACTCAGCCGCGGCACTTCTGCAAGACGTGCCGCCGCTACTGGACCAAAGGTGGGGCTCTCCGGAACGTCCCCATCGGAGGCGGATGCCGGAAGAATAAGAGCATTGGCGTGGCGAGCTCGGTGGCGGGGAAGACAGCCTCGACCAAGATGAAAACCATTGCATCGGAGTTTGGAAAATCGCCGGGCTTTGGCGGTGGGTTCGAGGTGGAACACGAACTTCCGCCACCACCGGGCCAAATCCTCTGGGGATCGCCCCAAAACACCCACCTTCTAGCCTTGCTGAGAGCTACACAAACTCAAAACCCTAACCCTAACCCTAGTCCCATGTCCCTCAAGGAAGAAGGAACCCTATTGGGCCACATGGTGAGCACTGATCAGCCCTTGGTTTCAAACACTTTGCTGAGCTACCGAACCTTAGGCTATGATGCTGTTGCGCAAGTTCCTTCTTCGCTTGGTCTGTTTGGGAGAAACAATCAAGATCAACAACAACAAAATGGAGGGTTCCTAGTTGGGGAACATCACAACAACAGTGGAATTCAAGAGCTTTACCAGAAGCTAAGGTCATCATCAACTGTTAATAATAATTATTGCAGTGATAATAACTCGTCACAAATGTTTATGGGGAACATGGCTTCTAACTATTCCTCTTCTGTGTCCAACAACATTTTGGAGACAACCTCGGTTGCTGGGGGTGAATTCGGATACTGGAATGGTCCAACTTTTTCTAATTGGTCTGATCTTCCAACCACTAATGGCGCTGGTGCATATCCGTAA 1059 0.4674 MIQELLGGALIAGERKPSSINGGGGGGGVLLPITTPSPSSFPSSTTSDVTLTSTTTTAATTAATAATTTTAVENLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKSIGVASSVAGKTASTKMKTIASEFGKSPGFGGGFEVEHELPPPPGQILWGSPQNTHLLALLRATQTQNPNPNPSPMSLKEEGTLLGHMVSTDQPLVSNTLLSYRTLGYDAVAQVPSSLGLFGRNNQDQQQQNGGFLVGEHHNNSGIQELYQKLRSSSTVNNNYCSDNNSSQMFMGNMASNYSSSVSNNILETTSVAGGEFGYWNGPTFSNWSDLPTTNGAGAYP 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01680 352 MobiDBLite consensus disorder prediction 16 47 - -
Gma17g01680 352 Pfam Dof domain, zinc finger 74 129 IPR003851 GO:0003677|GO:0006355
Gma17g01680 352 ProSiteProfiles Zinc finger Dof-type profile. 75 129 IPR003851 GO:0003677|GO:0006355
Gma17g01680 352 MobiDBLite consensus disorder prediction 33 47 - -
Gma17g01680 352 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 10 348 IPR045174 GO:0003700|GO:0006355
Gma17g01680 352 PANTHER DOF ZINC FINGER PROTEIN DOF5.1-LIKE 10 348 - -
Gma17g01680 352 ProSitePatterns Zinc finger Dof-type signature. 77 113 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01680 Gma-Chr17 21126652 21128027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01680 60 180 C2C2-Dof Transcription Factor Family AT1G51700 51.587 4.01e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gma17g01680 zf-Dof 1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01680 - - gmx:778108 646.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01859 01 54145863 54147422 Gma17g01680 17 21126652 21128027 PCT
Gma11g00546 11 4553161 4554807 Gma17g01680 17 21126652 21128027 PCT
Gma17g01680 17 21126652 21128027 Gma01g01859 01 54145863 54147422 PCT
Gma17g01680 17 21126652 21128027 Gma11g00546 11 4553161 4554807 PCT