Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01657 ATGGAAGTGAGTTTGGATTTGAGTTTGGCCTTTGTCCCTAGAAGAACCGTTTGTGAGATTCTTGGCGATATTGCTAAGAGCAAAGATGGGTCTCGGAGAATGGCCACAATTGAGGACTTAGTGAAAAGGTTGGAAGATGAGAAGAAGAAGATTGAAGCATTCAAACGTGAGCTTCCTCTTTGCATGATCCTTGTAAACGATGCTATTAGTAAATTGAAAGAAGAGATAAAGGGGGGTGTGAGAATGAAAGATGAAGCCGTGGTTGAAGAGTTGATGAAACTTATGAAAACCAATTCTGAAGCAAATGGGTCTTTGATGATTGTGGGGAACGAAAGCAGTGACACGAAGAATTGGATGAACTCTGTTCAGCTATGGAACGTTGAAACCAAACAGAGGAATGAAGAGGGTGATCTATTTGTGCCCAGCAATCCAATTGAACAAAAAAACGACACCAACAAGAGTGTCTCAAAGACAGTGATGAAGGACAACAAGAAAATGTCACAGGTTCCTAGTCTTGGGTTGATGAGTCCTGCAGTGTTGGAATTGAATCATAGAAAAACAGAAAGTGGTTATGGACATGGTTCGTCCATGATTATTACAAGCTCGGTTGAAATTAAGGGTCATCATCAATCACAACAACCTCAGCAGAATCCGAGGAAACAAAGGCGATGCTGGTCACCAGATCTTCATCGGCGATTTGTTGATGCGCTTCAACAATTAGGGGGCCCACAAGTGGCCACTCCAAAGCAGATTAGAGAACTGATGCAGGTGGTAGGCCTCACAAATGATGAAGTGAAAAGCCATTTGCAAAAGTACAGGCTTCATTTTAAAAGACCTCAAGGTTCTTCAATTGGCCATGCTAACAGTGGCTTATGCAAGATGGCACAAGATAAATGTGGAGACGATAAATCTGGCTCTCCACAAGGTCCACTCTTCCTAGGAGGGTCTGGAAAAGGTCTTTCAAGCTCTGGACGCAATAGCATGGACACAGAAGGAGATGAGGAATCAGATTGCCGCAATTGGAAAGGTGGGATTCATCACCAATTGCAACCAGAAAGTGACGTTTTGTGA 1071 0.4304 MEVSLDLSLAFVPRRTVCEILGDIAKSKDGSRRMATIEDLVKRLEDEKKKIEAFKRELPLCMILVNDAISKLKEEIKGGVRMKDEAVVEELMKLMKTNSEANGSLMIVGNESSDTKNWMNSVQLWNVETKQRNEEGDLFVPSNPIEQKNDTNKSVSKTVMKDNKKMSQVPSLGLMSPAVLELNHRKTESGYGHGSSMIITSSVEIKGHHQSQQPQQNPRKQRRCWSPDLHRRFVDALQQLGGPQVATPKQIRELMQVVGLTNDEVKSHLQKYRLHFKRPQGSSIGHANSGLCKMAQDKCGDDKSGSPQGPLFLGGSGKGLSSSGRNSMDTEGDEESDCRNWKGGIHHQLQPESDVL 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01657 356 MobiDBLite consensus disorder prediction 297 356 - -
Gma17g01657 356 Coils Coil 34 57 - -
Gma17g01657 356 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 346 IPR044787 GO:0003700|GO:0006355
Gma17g01657 356 MobiDBLite consensus disorder prediction 328 342 - -
Gma17g01657 356 SUPERFAMILY Homeodomain-like 218 278 IPR009057 -
Gma17g01657 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 217 277 IPR017930 -
Gma17g01657 356 PANTHER TRANSCRIPTION FACTOR HHO5 1 346 - -
Gma17g01657 356 Pfam Myb-like DNA-binding domain 222 273 IPR001005 -
Gma17g01657 356 Gene3D - 219 277 - -
Gma17g01657 356 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 220 275 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01657 Gma-Chr17 19807321 19810251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01657 1 276 G2-like Transcription Factor Family AT4G37180 37.282 8.49e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gma17g01657 Myb_DNA-binding 2.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01657 - - gmx:100794220 618.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01657 17 19807321 19810251 Gma01g01866 01 54210738 54212833 PCT
Gma17g01657 17 19807321 19810251 Gma11g00539 11 4493389 4495599 PCT