Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01653 ATGAGGTGGTTGCCCACGCTTTCGTTCTCGCCTTCTTCGAATCCTTCTTCTTCGTCTTCGTCTTCGTCGTCGTTATCTTTGTCTTCTTCTTCTGCCGCCCCCGACCACCGCCGGAAGGCATGGATCTTCGGAAATTCGGCGAAGAAGCGCACCTGCCACGTCGGCGATCACGACGAAGATGCACTGGTTTCTTCCCCCGGCACGCCTCAGCCGTTGCCCCTGCCGGAGCTCGCTGTCTCCGCCGCCGTGCTCCGTCAGCGAGACGGCGAGTGCCGTCTTCCTTCGCCCAAGGATGCTGCACCCTCCACCACCACCACCGGCTTTCGGATGCGGAGTGTTTTTGCTAGCCAAGAGACAAGAAGGAATATGGAGCAGGCAGAAACTAGGTCATCGAGAATGGTGCAGCAAGATGCAAGTGGTTGCCGTGAGAGTGCTCGAGATAATAGTAATAATAACTTGGTGAATGTCCCTCATAGGAGGAGTATTTCGGGTAGTCCTTCAATGAGTCCTCAGAAAACAAGGAATGGTGATTTTGTGCCATATTATTATGCGTGTCCAAAAGGAAATCAGTTCTGGTCCACACCAGAAATGCCTACCTGTGATGCAGGGTTGCTACCTCCTGCCTTCTTTGATTTATCCGCGTTAAGCACAGAAACTTCTCTTTCTCCCAATTCCCATCAAAGTCCACAAAGAAAAAGTCCCCAGAAACACACCAGAACTTTTAGTGGACCTCCATCCCCCATACATCCCATGTTATCACTCGAGATCCCAACAGTGCGCCACGAAAATAATGCTCCTCCTGTCGCTGTTCACCCCTTGCCCCTGCCTCCCAGGGCTGGCTTGACCTCGCCGCCTGCTGCCGCTACCTTTTCCCACGCCATGGTTAAGTCAGAATCGCTGCCAATGAAAAGCCAATGGAAGAAAGGGAAACTTATTGGGCGTGGGACGTTTGGAAGCGTTTATGTCGCAACCAATAGGGAAACCGGAGCATTATGTGCAATGAAGGAAGTAGAATTATTTCCTGATGATCCAAAATCTGCTGAGTGTATAAAGCAGTTAGAGCAGGAAATTAAAGTTCTTAGCAATCTAAAACATTCAAACATCGTACAGTATTATGGCAGTGAAATAGTTGAGGACCGGTTTTATATTTATCTGGAATATGTTCATCCTGGTTCAATTAATAAATATGTCCGTGATCATTGTGGTGCCATAACAGAATCTGTCATTCGGAATTTCACTCGCCATATTCTCTCAGGGTTGGCTTATTTACATAGCAAAAAAACAATTCATAGGGACATCAAAGGGGCTAACTTGCTTGTTGACTCTGCTGGAGTTGTTAAGCTAGCTGATTTTGGGATGGCTAAGCATCTAACTGGGTTTGAAGCTAATCTTTCTTTGAGGGGAAGTCCATACTGGATGGCTCCAGAGCTTTTGCAGGCTGTGATACAAAAGGATAACAGCCCTGATCTTGCTTTTGCTATTGATATTTGGAGTTTGGGTTGTACCATCATTGAAATGTTCACTGGGAAGCCTCCTTGGAGTGAATATGAAGGAGCTGCAGCTCTGTTTAAGGTTATGAAGGAGACCCCTCCTATACCTGAAACACTTTCATCTGAGGGTAAAGATTTCTTGAGGTGCTGCTTTAAAAGAAATCCAGCAGAGCGGCCAACAGCTGCAGTTTTACTAGAACATCGATTTTTGAAAAACTCGCAACAGCCAGATGCTATATCTCCCACCCAGCTTTATAATGGAACAAGCTTCATGGACAAACCACATACTCCCAGTGGGCAATCTGAAAATAGATATGGTCAGTTTTCAACTCCCTGTGCAAAGATTGCAAAGGGTAAAGCAGCCGAAAGGCGAGGATTTCTCATTTCTTCGTTAGATATTCTCCCTGCATACTTTGACCAATAA 1914 0.4676 MRWLPTLSFSPSSNPSSSSSSSSSLSLSSSSAAPDHRRKAWIFGNSAKKRTCHVGDHDEDALVSSPGTPQPLPLPELAVSAAVLRQRDGECRLPSPKDAAPSTTTTGFRMRSVFASQETRRNMEQAETRSSRMVQQDASGCRESARDNSNNNLVNVPHRRSISGSPSMSPQKTRNGDFVPYYYACPKGNQFWSTPEMPTCDAGLLPPAFFDLSALSTETSLSPNSHQSPQRKSPQKHTRTFSGPPSPIHPMLSLEIPTVRHENNAPPVAVHPLPLPPRAGLTSPPAAATFSHAMVKSESLPMKSQWKKGKLIGRGTFGSVYVATNRETGALCAMKEVELFPDDPKSAECIKQLEQEIKVLSNLKHSNIVQYYGSEIVEDRFYIYLEYVHPGSINKYVRDHCGAITESVIRNFTRHILSGLAYLHSKKTIHRDIKGANLLVDSAGVVKLADFGMAKHLTGFEANLSLRGSPYWMAPELLQAVIQKDNSPDLAFAIDIWSLGCTIIEMFTGKPPWSEYEGAAALFKVMKETPPIPETLSSEGKDFLRCCFKRNPAERPTAAVLLEHRFLKNSQQPDAISPTQLYNGTSFMDKPHTPSGQSENRYGQFSTPCAKIAKGKAAERRGFLISSLDILPAYFDQ 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01653 637 MobiDBLite consensus disorder prediction 218 242 - -
Gma17g01653 637 Gene3D Transferase(Phosphotransferase) domain 1 302 597 - -
Gma17g01653 637 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 5 1 614 - -
Gma17g01653 637 SMART serkin_6 306 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g01653 637 Pfam Protein kinase domain 307 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g01653 637 ProSitePatterns Protein kinases ATP-binding region signature. 312 335 IPR017441 GO:0005524
Gma17g01653 637 MobiDBLite consensus disorder prediction 118 173 - -
Gma17g01653 637 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 614 - -
Gma17g01653 637 MobiDBLite consensus disorder prediction 128 173 - -
Gma17g01653 637 ProSiteProfiles Protein kinase domain profile. 306 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g01653 637 MobiDBLite consensus disorder prediction 1 33 - -
Gma17g01653 637 MobiDBLite consensus disorder prediction 218 248 - -
Gma17g01653 637 SUPERFAMILY Protein kinase-like (PK-like) 295 598 IPR011009 -
Gma17g01653 637 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01653 Gma-Chr17 19631188 19636421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01653 129 589 MAP Kinase Kinase Kinase AT5G66850 63.860 0.0 604
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gma17g01653 Pkinase 6.1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01653 - - gmx:100790701 1238.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01869 01 54249965 54257431 Gma17g01653 17 19631188 19636421 PCT
Gma11g00536 11 4461250 4465476 Gma17g01653 17 19631188 19636421 PCT
Gma17g01653 17 19631188 19636421 Gma01g01869 01 54249965 54257431 PCT
Gma17g01653 17 19631188 19636421 Gma11g00536 11 4461250 4465476 PCT