Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01627 ATGGTGGTGATTGATGAAAAGAACCGTGTGATTAGGAGGGATATGGTGGAGCTTTCACAACATGATCAATCTGTAACTGTGGCATATTATGGGGAGGAGTTGCATGGGGGCGTGCCTCTACCCCGCTTCTCTAGAATGTCTCCTTTAAACACGGATAGACAAAACAAGGGAATGGAGAATAAATACAAGCTCTTGAACAGTCCGGTAAAGCAAGCAACGCCTGCTGAAGCTCAGAAGTTTGCAAGTTCCATTAAGGTCGCAACAGAAGGAACATCCTCTCGTGGTCAGGCAATGTCATCTGCTGTTCTTCAAGCAGAGGAAGTCCAATCAAATTTGGAAAGAGAATTCCCTAGTTTTGTGAAGTCTTTAGTTAGATCACACGTTGCTAGTTGTTTTTGGATGGGGCTGCCTGTGTCATTCTGTAAAAGACACTTACCGGATAAGGATACAACATTCATTTTGGAAGATGAATCTGGTAAAGAATACATGACAAAATACATTGCATGTAAGACAGGATTGAGTGCTGGATGGAGACAGTTTTCTGCTGTGCACAAATTGCATGAGGGTGATGTGGTTGTCTTCCAATTAGTGGAACCTACCAAATTTAAGGTTTACATAATAAGAGCTAATAATACGAGGGAACTAGATGGAGCCTTTCTGAGTCTTGATAGTTGCATAAAACAAAAAATGGGAGGCAATGATAATGCAGATAGTGATGATGTGGCATGTAATAACTCAAAGAGAAAACATGGTAAATCTGTCCAACAAGATGTCCAAACGAAAAAGAAGGCCAGCGCGTCAAGATTGAGACCTAAGGCAAGGCCATCAGTCGAACAATCTGAAAATGATAGTGAGGAAGCTCTCTCAGAAGTTATGGAGGGCTTTAAAATGCTCGAGTTCAATGATGTGAAAGGTTTTGAAAATTTCAGCATCATAGTTGATGGAGTACCAATAGATGCTGAATTCTCTACCGAGGTTCGAAACAAGTACTACAGGCTCTGCTGCAGTCAGCATGCCTTTCTTCATGAAAATCTCATTAAGGGCATGAACTATAAGCTGATTGCTGGAATTATATTGGAAACTGTCAACATTGCTGATGCAATAGAAGTTAGTGTGATATGTACCCCACGTGCAGAATTTTCTAACTGGGACAAAACTTTGCTTGCCTTTGAGCATTTAGGCATGGATGTTGAATTTCTAAGAGTCCGATTACGCCGGCTTGCAAGAATTGCCTATGAGAAAGATGATGCCTCTGAGACCAAAAAACACTTGGCATATAGGAATGAGTACAGTCGCGCAGACGATGAAATAAAGAACATGGAAGCCAAGCTTGAAGAATTGAAGGGAGCATGCAATGGTTTTGGTGCTTATCTTGAGAGTTTGAAGTGCAGAGCTGAAAGCAATCATATCAAGTTTCAGAAAGAGGTTGTTGCTCCTTGGTGA 1443 0.4137 MVVIDEKNRVIRRDMVELSQHDQSVTVAYYGEELHGGVPLPRFSRMSPLNTDRQNKGMENKYKLLNSPVKQATPAEAQKFASSIKVATEGTSSRGQAMSSAVLQAEEVQSNLEREFPSFVKSLVRSHVASCFWMGLPVSFCKRHLPDKDTTFILEDESGKEYMTKYIACKTGLSAGWRQFSAVHKLHEGDVVVFQLVEPTKFKVYIIRANNTRELDGAFLSLDSCIKQKMGGNDNADSDDVACNNSKRKHGKSVQQDVQTKKKASASRLRPKARPSVEQSENDSEEALSEVMEGFKMLEFNDVKGFENFSIIVDGVPIDAEFSTEVRNKYYRLCCSQHAFLHENLIKGMNYKLIAGIILETVNIADAIEVSVICTPRAEFSNWDKTLLAFEHLGMDVEFLRVRLRRLARIAYEKDDASETKKHLAYRNEYSRADDEIKNMEAKLEELKGACNGFGAYLESLKCRAESNHIKFQKEVVAPW 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01627 480 SMART B3_2 119 210 IPR003340 GO:0003677
Gma17g01627 480 MobiDBLite consensus disorder prediction 241 257 - -
Gma17g01627 480 SUPERFAMILY DNA-binding pseudobarrel domain 113 210 IPR015300 -
Gma17g01627 480 CDD B3_DNA 117 208 IPR003340 GO:0003677
Gma17g01627 480 ProSiteProfiles B3 DNA-binding domain profile. 119 210 IPR003340 GO:0003677
Gma17g01627 480 MobiDBLite consensus disorder prediction 234 285 - -
Gma17g01627 480 Gene3D - 98 212 IPR015300 -
Gma17g01627 480 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 21 417 IPR044837 -
Gma17g01627 480 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0234100-LIKE 21 417 - -
Gma17g01627 480 Pfam B3 DNA binding domain 119 209 IPR003340 GO:0003677
Gma17g01627 480 Coils Coil 423 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01627 Gma-Chr17 18820225 18824514 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01627 101 268 B3 DNA Binding Superfamily AT3G19184 40.000 1.67e-34 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma17g01627 B3 6.1e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01627 - - gmx:100819237 944.88