Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01621 ATGTCACAGCAGCAGCGTTCGACGCCGGCGCCGTTCTTGACGAAGACGTATCTGCTGGTGGATGACCCCGCCACCGACGACGTCGTTTCGTGGAGCGAAGGTGGCAATACCTTCGTCGTTTGGAAACACGCCGATTTCGCTAAGGACTTGCTTCCGAAGTACTTCAAGCATAATAATTTCTCCAGCTTCGTTCGCCAACTCAACACCTATGGATTCCGAAAAACTGTTCCCGACAAATGGGAATTTGCCAATGAGTATTTCAAGCGAGGACAGACGGATCTTCTCGCCGAGATCAGGCGGCGGAAGGTGGTGTCTCCGGTGACCGGAAAATCTACCGGCGGTGGCGTTAACATCTCGGCGTCCCACTCCGGCGGCGACGACATGGGGTCGACATCGACGGGATCGATGGAGGCGGCAACGGCGGCGGGCGCTGATATATCGGGCGAGAACGAGAAATTGAAGAAGGACAACGAGAAATTGAGCGGCGAGTTAGCGCTGGCGAAGAAACAATGCGAGGAGTTGGTGGCGTTTCTTAGAGACTCGCTGAACGTGAGCCCCGATGTGATAGAGCGCATCATTCGGCAAGGAACGTGTGTGTCCAGCAACAATGATGCGGTGCGTTTTGATGCTATTATTAATAATGATCTTGATGACGACGAAAATGCGGTAGGTGAGTGTGAACCACAACAACCACCACCCAAAGGTGACAATGGAGAAAGTTTGAAACTATTTGGGGTTTGGTTGAAGGGTCAAAATGGGAAAGAGAATTCAATTGGTAAATGCCGCAAGAGAGGGCGCCAAGACTACCCTATTGCTGCCACTGCCAAGGAATTGAAGACCCTAGTCTAG 849 0.5218 MSQQQRSTPAPFLTKTYLLVDDPATDDVVSWSEGGNTFVVWKHADFAKDLLPKYFKHNNFSSFVRQLNTYGFRKTVPDKWEFANEYFKRGQTDLLAEIRRRKVVSPVTGKSTGGGVNISASHSGGDDMGSTSTGSMEAATAAGADISGENEKLKKDNEKLSGELALAKKQCEELVAFLRDSLNVSPDVIERIIRQGTCVSSNNDAVRFDAIINNDLDDDENAVGECEPQQPPPKGDNGESLKLFGVWLKGQNGKENSIGKCRKRGRQDYPIAATAKELKTLV 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01621 282 SUPERFAMILY "Winged helix" DNA-binding domain 8 101 IPR036390 -
Gma17g01621 282 PRINTS Heat shock factor (HSF) domain signature 12 35 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma17g01621 282 PRINTS Heat shock factor (HSF) domain signature 50 62 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma17g01621 282 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma17g01621 282 MobiDBLite consensus disorder prediction 219 240 - -
Gma17g01621 282 Gene3D - 3 102 IPR036388 -
Gma17g01621 282 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 4 257 IPR027725 -
Gma17g01621 282 Coils Coil 150 170 - -
Gma17g01621 282 SMART hsfneu3 8 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma17g01621 282 MobiDBLite consensus disorder prediction 114 135 - -
Gma17g01621 282 Pfam HSF-type DNA-binding 12 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma17g01621 282 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 4 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01621 Gma-Chr17 18739276 18743160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01621 1 274 HSF AT4G36990 51.246 1.72e-81 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gma17g01621 HSF_DNA-bind 8.3e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01621 K09419 - gmx:100801638 553.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01888 01 54424433 54426845 Gma17g01621 17 18739276 18743160 PCT
Gma11g00515 11 4320783 4323371 Gma17g01621 17 18739276 18743160 PCT
Gma17g01621 17 18739276 18743160 Gma01g01888 01 54424433 54426845 PCT
Gma17g01621 17 18739276 18743160 Gma11g00515 11 4320783 4323371 PCT