Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01596 ATGTCTTCTTCCACACAGGACGAAATCTCCTTTGTCCTGCGTCAGTTTCTTCTTCGTTCCTCTGTCACAACCCACGAGAGTAACGACGACGCACGCAATTCCATGTCCAAAACTGCTCTACCAGATGGGATCTCAGCCTACAAGGGTTCTTCTGCTGCCAACGTGTCTTCTCTGTCGGTGGCAGCGAGTGAGAATGAAACTGATGACTTCGACTGCGAGAGTGAGGAAGAAGAGGTTCCAACTCCACCAAAGTCGATTCGTTCTAGGAGTTCCTCCAAAAGGAACAGAGCTGCGGAAGTTCATAACCTCTCTGAAAAGCGGAGGAGGAGTAGGATCAATGAGAAATTGAAGGCTTTGCAAAATCTTATTCCAAATTCTAACAAGACTGATAAGGCTTCAATGCTTGATGAAGCTATTGAATATCTTAAACAGCTTCATCTCAAAGTACAGATGCTGTCAATGAGAAATGGGTTGAGTTTGCATACTATGTTCTTTCAAGAAGGTTTGCAACCTCTGCAATTGTCTCAGGTGCCGAGAATGGATTCAGGTGAAGAAAGCAGACTTATCCCTTCAAACCCAACAGCTTCTCTGCCTATGCACCAAGAAAACCCCATGCACTATTTGTCCAATCTACCTAACAAACTCGCCATGGCAGATCAGCAATCCGTGCCAACTCCATCATATATAATCAACTCAGAAACTTCTTTCAGGCTGGAATCTCCTATTCCAGAAAATATAAGATCATTTCAACTCCGAAGATTTCCCGAG 768 0.4427 MSSSTQDEISFVLRQFLLRSSVTTHESNDDARNSMSKTALPDGISAYKGSSAANVSSLSVAASENETDDFDCESEEEEVPTPPKSIRSRSSSKRNRAAEVHNLSEKRRRSRINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLHLKVQMLSMRNGLSLHTMFFQEGLQPLQLSQVPRMDSGEESRLIPSNPTASLPMHQENPMHYLSNLPNKLAMADQQSVPTPSYIINSETSFRLESPIPENIRSFQLRRFPE 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01596 256 CDD bHLH_AtPIF_like 97 158 - -
Gma17g01596 256 Gene3D - 91 155 IPR036638 GO:0046983
Gma17g01596 256 PANTHER TRANSCRIPTION FACTOR SPATULA 3 253 - -
Gma17g01596 256 MobiDBLite consensus disorder prediction 22 108 - -
Gma17g01596 256 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 3 253 IPR031066 -
Gma17g01596 256 MobiDBLite consensus disorder prediction 92 108 - -
Gma17g01596 256 Pfam Helix-loop-helix DNA-binding domain 100 146 IPR011598 GO:0046983
Gma17g01596 256 MobiDBLite consensus disorder prediction 22 40 - -
Gma17g01596 256 SMART finulus 102 151 IPR011598 GO:0046983
Gma17g01596 256 MobiDBLite consensus disorder prediction 49 64 - -
Gma17g01596 256 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 96 145 IPR011598 GO:0046983
Gma17g01596 256 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 93 156 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01596 Gma-Chr17 17771842 17774466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01596 65 177 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 70.833 4.90e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma17g01596 HLH 3.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01596 - - gmx:100806962 473.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01904 01 54581297 54584325 Gma17g01596 17 17771842 17774466 PCT
Gma11g00500 11 4176148 4180266 Gma17g01596 17 17771842 17774466 PCT
Gma17g01596 17 17771842 17774466 Gma01g01904 01 54581297 54584325 PCT
Gma17g01596 17 17771842 17774466 Gma11g00500 11 4176148 4180266 PCT