Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01593 ATGCCTCTTTCACCATTTGAAACATTGGAGTTGCTTCCTTTATTTCCGCTCACACCAGAAAATGCAGGGCAAGTAGAAGATATGCCTGGAGCCGATGATATGGCTCCATTGCTCGGACAAGAGAGTACCATGTTTAGACAAGTTGGAACCTCGGTTGGGACTCCTTCATTTAATTTGCCCCAGAGGCTCAATCATTTAGAGCCAAGGCAATTAGTATCTGGATATGAGGACGATAATGGTAATGAAGCGGTTGTGTACCACCTTCTGAATGACCAAGCTGGCCTTTCAACGTTGAGAGCTTCACAGTCACAAAGATTGAACTACTCTGGTGGAGCAAGTAGTTCTAGAACTCATAACTATCATAATCAAGTGCAAGTATTAGAATCTGGAGTTCCACCTTACGTCCAACATGGACCCTCGTTGTCACCACTACCATCATATCCTTCCGCGGAAGAGAGAAGAAGGCTTTCATCTTACGTTCAGTCTACCCTAGAAGCTCTACGCAGTGGTCCATCCGCTGTAATGTTCGATATAGATTTTGACACAATGGAATTCAGGAGCATCGACCACGCACTTGTGTCACCATATGGGTTTCAGCAGAACCCCGAAGAATTTGATGCATTGCCCCAGGGACTTACTGTAGAAACGATCGTGCAGCACCTGGAGAGTGAAACTTATGTGATTGTTAATAAGGATGCTCCAGAAGAAGATAAGGAAAAATGCCCCATTTGTCTGGAAGAGTTTGAAGAGGGAAACTTAATTGGGAAGCTTCATTCTTGTATCCACAAGTATCACCGTCACTGCATCCGACAGTGGCTTTTGTGCAGGAACTTTTGCCCAGTGTGCAAAAGAGTTGGGCTGGAAACCAACAATAATGTTAAAAGTGAAGCTACAGCAGCGGAAATTAATATTAATGAAAATGACAATGACAATGTTTAG 939 0.4366 MPLSPFETLELLPLFPLTPENAGQVEDMPGADDMAPLLGQESTMFRQVGTSVGTPSFNLPQRLNHLEPRQLVSGYEDDNGNEAVVYHLLNDQAGLSTLRASQSQRLNYSGGASSSRTHNYHNQVQVLESGVPPYVQHGPSLSPLPSYPSAEERRRLSSYVQSTLEALRSGPSAVMFDIDFDTMEFRSIDHALVSPYGFQQNPEEFDALPQGLTVETIVQHLESETYVIVNKDAPEEDKEKCPICLEEFEEGNLIGKLHSCIHKYHRHCIRQWLLCRNFCPVCKRVGLETNNNVKSEATAAEININENDNDNV 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01593 312 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 156 IPR045191 GO:0061630
Gma17g01593 312 SUPERFAMILY RING/U-box 226 287 - -
Gma17g01593 312 SMART ring_2 241 282 IPR001841 -
Gma17g01593 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 208 286 IPR013083 -
Gma17g01593 312 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 1 156 - -
Gma17g01593 312 ProSiteProfiles Zinc finger RING-type profile. 241 283 IPR001841 -
Gma17g01593 312 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 159 287 - -
Gma17g01593 312 Pfam Ring finger domain 240 283 IPR001841 -
Gma17g01593 312 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 159 287 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01593 Gma-Chr17 17692405 17695422 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01593 203 289 C3H Transcription Factor Family AT2G15530 33.708 1.30e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01593 - K10635 gsj:114392181 550.436