Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01592 ATGAATCCTCAAGGTGACTCTGATGGTCAAACTAATACCAACAACAGATCAAACAACGAAAACGAAATGATGCCTCTTTCACCATTTGAAACATTGGAGTTGCTTCCTTTATTTCCGCTCTCACCAGAAAATGCAGGGCAAGTAGAAGATATGCCTGGAGCCGATGATATGGCTCCATTGCTCGGACAAGAGAGTACCATGTTTAGACAAGTTGGAACTTCGGTTGGGACTCCTTCATTTAATTTGCCCCAGAGGCTCAATCATTTAGAGCCAAGGCAATTAGTATCTGGATATGAGGACGATAATGGTAGAGTTCGTAATGAAGCGGTTGTGTACCACCTTCTGAATGACCAAGCTGGCCCTTCAACTTTGAGACCTTCACAGTCACAAAGATTGAACTACTCTGGTGGAGCAAGTAGCTCTAGAACTCATAACTATCATAATCAAGTGCAAGTATTAGGAACTGGAGTTCCACCTTACGTCCAACATGGACCCTCGTTGTCACCACTACCATCATATCCTTCTGCGGAAGAGAGAAGAAGGCTTTCATCTTACGTTCACTCTATCCTAGAAGCTCTACGCAGTGGTCCATCCGCTGTAATGTTTGATATAGATTTTGACACAATGGAATTCAGGAGCATCGACCACGCACTTGTGTCACAATATGGGTTTCAGCAGAACCCCGAAGAATTTGATGCATTACCCCAGGGACTTACTGTCGAAACGATCGTGCAGCACCTGGAGAGTGAAACTTATGTGATTGTTAATAAGGATGCTCCAGAAGAAGATAAGGAAAAATGCCCCATTTGTCTGGAAGAGTTTGAAGAGGGAAACTTAATTGGGAAGCTTCATTCTTGTATCCACAAGTATCACCGTCACTGCATCCGACAGTGGCTTTTGTGCAGGAACTTTTGCCCAGTGTGCAAAAGAGTTGGGCTGGAAACCAACAATAATGTTAAAAGTGAAGCTACAGCAGCTGAAGTTAATATTAATGAAAATGACAATGACAATGTTTAG 1017 0.4297 MNPQGDSDGQTNTNNRSNNENEMMPLSPFETLELLPLFPLSPENAGQVEDMPGADDMAPLLGQESTMFRQVGTSVGTPSFNLPQRLNHLEPRQLVSGYEDDNGRVRNEAVVYHLLNDQAGPSTLRPSQSQRLNYSGGASSSRTHNYHNQVQVLGTGVPPYVQHGPSLSPLPSYPSAEERRRLSSYVHSILEALRSGPSAVMFDIDFDTMEFRSIDHALVSQYGFQQNPEEFDALPQGLTVETIVQHLESETYVIVNKDAPEEDKEKCPICLEEFEEGNLIGKLHSCIHKYHRHCIRQWLLCRNFCPVCKRVGLETNNNVKSEATAAEVNINENDNDNV 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01592 338 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 2 181 - -
Gma17g01592 338 MobiDBLite consensus disorder prediction 155 175 - -
Gma17g01592 338 Pfam Ring finger domain 266 309 IPR001841 -
Gma17g01592 338 ProSiteProfiles Zinc finger RING-type profile. 267 309 IPR001841 -
Gma17g01592 338 SMART ring_2 267 308 IPR001841 -
Gma17g01592 338 MobiDBLite consensus disorder prediction 119 143 - -
Gma17g01592 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 312 IPR013083 -
Gma17g01592 338 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 185 313 - -
Gma17g01592 338 MobiDBLite consensus disorder prediction 1 23 - -
Gma17g01592 338 MobiDBLite consensus disorder prediction 120 143 - -
Gma17g01592 338 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 2 181 IPR045191 GO:0061630
Gma17g01592 338 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 185 313 IPR045191 GO:0061630
Gma17g01592 338 SUPERFAMILY RING/U-box 252 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01592 Gma-Chr17 17201823 17205072 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01592 229 315 C3H Transcription Factor Family AT2G15530 33.708 1.35e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01592 - K10635 gsj:114392181 619.002