Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01571 ATGATTAATTGTAATGGAGTTTTCGGATTGGTGATCGAAGGTGTTCCTTGGACGGAGGAAGAGCATAGGTTATTCCTGTTAGGGTTACACAAAGTTGGAAAAGGAGATTGGAGAGGAATTTCTCGAAACTTCGTGAAAACTCGCACGCCAACTCAGGTCGCTAGTCACGCTCAGAAGTACTTCCTCCGTCGCCACAACCAGAACCGTCGTCGTCGGAGATCTAGCCTCTTCGACATCACCATAGGTAAAGAGGGAGAGAGGAGGGAGGGGGGAGGGAAGAACAATGACCGGGATGATATCGATCGCAAGGTTTGCCACAAAGGGTGCAATGAGACTCAGTTGGATACAATGAAAGCGATCACAAAGGAGTCATCGTGGACATGCAAGCCAAAGGGAGCGGCGTCGAGGACACAATTAAAATCGAAGCTAAGGACTCCTTCGGAATCCTTCATTGGGACTCCCCCTCTCGCTACTCCGTCATCATCATATAGGTTCTAG 498 0.49 MINCNGVFGLVIEGVPWTEEEHRLFLLGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHNQNRRRRRSSLFDITIGKEGERREGGGKNNDRDDIDRKVCHKGCNETQLDTMKAITKESSWTCKPKGAASRTQLKSKLRTPSESFIGTPPLATPSSSYRF 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01571 165 PANTHER TRANSCRIPTION FACTOR KUA1 13 86 - -
Gma17g01571 165 SUPERFAMILY Homeodomain-like 15 64 IPR009057 -
Gma17g01571 165 CDD SANT 16 61 IPR001005 -
Gma17g01571 165 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 65 IPR017930 -
Gma17g01571 165 ProSiteProfiles Myb-like domain profile. 16 61 IPR001005 -
Gma17g01571 165 MobiDBLite consensus disorder prediction 72 101 - -
Gma17g01571 165 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE 13 86 - -
Gma17g01571 165 MobiDBLite consensus disorder prediction 67 101 - -
Gma17g01571 165 MobiDBLite consensus disorder prediction 131 165 - -
Gma17g01571 165 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 14 63 IPR006447 GO:0003677
Gma17g01571 165 Gene3D - 15 66 - -
Gma17g01571 165 Pfam Myb-like DNA-binding domain 16 61 IPR001005 -
Gma17g01571 165 ProSiteProfiles SANT domain profile. 12 65 IPR017884 -
Gma17g01571 165 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01571 Gma-Chr17 16320310 16323622 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gma17g01571 Myb_DNA-binding 1.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01571 - - gmx:778178 125.561