Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01567 ATGTGGGATCTCAACGACTCACCCGATCAGAGGATTAACAAGGACGAAGGATCCGAAGAAGGGTGTTCTTCCCTCAAGACTTCCATCGATGGAGATGACATGATCAACAACAACAAAGGCAAAAGGGTTGGATCTGTTTCCAATTCGAGCTCTTCTGCAGTAGTCATCGAAGACGGATCagaagaagaagtggacgaagaagaagaagaagaagaagatgatgaagaagGTGGTGTTGGAAGAAGCATGAAGAAACGTAGCAGCAAGATTTTCGGGTTCTCTGTGACCCAAGATGAAGAGTCCATGGACAGTGACCACCCACCTGTGACAAGGCAATTTTTTCCGGTGGAAGATGCTGACGTAGCGGTTGCAACAGGTGGTGGAACCGGTGGAAGCTCTACTTTCCCTCGTGCTCACTGGGTGGGTGTGAAATTTTGCCAATCAGAAACACTTGGCGCTGGAAAATCATCAGTGGAGGTTTCTCAACCTATGAAGAAGAGTCGCCGAGGACCGAGGTCAAGGAGCTCTCAGTATAGAGGAGTCACCTTCTACCGAAGAACGGGTCGCTGGGAGTCTCATATATGGTTAGTACTTAATTCCCTTCCATTACATGAAAATGTAATAGATGTTGCTTATGATAGAGCGGCTATTAAATTCCGAGGAGTGGAGGCTGACATTAACTTCAATATTGAAGACTATGAAGATGACTTGAAGCAGATGAGCAATCTTACCAAGGAAGAGTTCGTCCACGTGCTTCGCCGACAAAGCACTGGATTTCCGAGAGGAAGCTCCAAATATAGAGGTGTCACTTTGCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTTTAGGGAAAAAGTACGTTTATTTGGGTCTCTTTGACACTGAGATAGAAGCTGCAAGGGCTTATGACAAAGCCGCCATAAAATGCAATGGCAAAGAGGCTGTAACGAATTTTGATCCCAGCATCTACAACAATGAGCTCAATACCGCAGAATCCACAGGTAACGCTCCAGATCACAATCTGGATTTAAGTTTGGGCAATGCAACTTCAAAGCCTGGCAATAATCAAGCGTTGGGGAATCACGCCACAAATGCTGTAACCCATGATCAGCACCTGCCATCTGAGTCTAATTGGCGTAATGGGGGAAACAAGCCTAAGCTGGTGAATATACTCCCCAAACCATGTAATAGAAGCAACAACAAGGACTCACATGGAAGGGATGTGCACGGGGAGAGTGAAACACTGAGGATGCTAAGTCAAACCCACCTTCATTCTCCAGCCTCCAATGAAATGCAACTAAGATATGGTCCCTACAAGTCTCACGGTGGAGAGTCCCAAATGCTTCAAAATTTTGCACACATTCACCCACCAAATTTTCATTTTCCCAGCAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCAATGACTGATCAACAACAGTGGCAAACCGGGCCTTCACATTATTTAGCAACTGCTGCAGCATCATCAAGTTTCCAACAACAGATAAGACCCTCTTCTCAAGGTTGGCTGCAGAAAAATGGGTTCCACATTCTCATGAGACCCTCATGA 1587 0.4461 MWDLNDSPDQRINKDEGSEEGCSSLKTSIDGDDMINNNKGKRVGSVSNSSSSAVVIEDGSEEEVDEEEEEEEDDEEGGVGRSMKKRSSKIFGFSVTQDEESMDSDHPPVTRQFFPVEDADVAVATGGGTGGSSTFPRAHWVGVKFCQSETLGAGKSSVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWLVLNSLPLHENVIDVAYDRAAIKFRGVEADINFNIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYNNELNTAESTGNAPDHNLDLSLGNATSKPGNNQALGNHATNAVTHDQHLPSESNWRNGGNKPKLVNILPKPCNRSNNKDSHGRDVHGESETLRMLSQTHLHSPASNEMQLRYGPYKSHGGESQMLQNFAHIHPPNFHFPSSSIGGRIGSDLSLSMTDQQQWQTGPSHYLATAAASSSFQQQIRPSSQGWLQKNGFHILMRPS 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01567 528 PRINTS Ethylene responsive element binding protein signature 266 277 IPR001471 GO:0003700|GO:0006355
Gma17g01567 528 PRINTS Ethylene responsive element binding protein signature 304 324 IPR001471 GO:0003700|GO:0006355
Gma17g01567 528 Gene3D AP2/ERF domain 176 231 IPR036955 GO:0003700|GO:0006355
Gma17g01567 528 Gene3D AP2/ERF domain 264 323 IPR036955 GO:0003700|GO:0006355
Gma17g01567 528 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 526 - -
Gma17g01567 528 Pfam AP2 domain 264 313 IPR001471 GO:0003700|GO:0006355
Gma17g01567 528 MobiDBLite consensus disorder prediction 58 76 - -
Gma17g01567 528 MobiDBLite consensus disorder prediction 154 177 - -
Gma17g01567 528 SUPERFAMILY DNA-binding domain 264 324 IPR016177 GO:0003677
Gma17g01567 528 CDD AP2 264 324 IPR001471 GO:0003700|GO:0006355
Gma17g01567 528 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 526 - -
Gma17g01567 528 MobiDBLite consensus disorder prediction 1 85 - -
Gma17g01567 528 MobiDBLite consensus disorder prediction 22 56 - -
Gma17g01567 528 ProSiteProfiles AP2/ERF domain profile. 265 322 IPR001471 GO:0003700|GO:0006355
Gma17g01567 528 SMART rav1_2 265 328 IPR001471 GO:0003700|GO:0006355
Gma17g01567 528 SMART rav1_2 177 235 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01567 Gma-Chr17 16240278 16244669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01567 1 361 AP2-EREBP Transcription Factor Family AT4G36920 61.008 2.06e-120 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma17g01567 AP2 3.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01567 K09284 - gmx:100792442 949.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01567 17 16240278 16244669 Gma05g00933 05 24511252 24513247 GST
Gma01g01912 01 54652859 54656513 Gma17g01567 17 16240278 16244669 PCT
Gma11g00492 11 4107752 4111440 Gma17g01567 17 16240278 16244669 PCT
Gma17g01567 17 16240278 16244669 Gma01g01912 01 54652859 54656513 PCT
Gma17g01567 17 16240278 16244669 Gma11g00492 11 4107752 4111440 PCT