Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01566 ATGCCCGAGTGTCAGAAACAACCAGCTTCTAGACCGAAGCAAAAGCTTCACTCCTTGCAAGAGTCCAAGGCGATGAGAAAACTGCGCATCATTTGCGACGATCCTGATGCTACTGATTCATCCGATGATGACTCCAAGAGGATTCAGAACCCGAGAATAGTTAAAAGAAGTATGTGTGAGATCTCTCTTCTCCCTCTTCTTCACACATTCACCACTCTTGAAACTAGTTCTTGTGAGTTGAATAACAAAAAAAATACAATGAGGGTTAGCACTAAAGGTCAACCCCAAAGTAAGAAGAGGGTTTTGACTCATACCCCATCAACGAGGAGGAAGACTCCTGGTAAATATAGAGGTGTCAGGCAGAGAAAATGGGGTAAATGGGCTTCTGAGATCTATAACCCATTTCAGAACAATCGTATATGGTTAGGCACTTTCAACACTGCAGAAGAGGCTTCCCAAGTCTATGAGGCCAGAAGGCTTGAGTTAGAAGCTATGGCAAAGGCTCAAGCTTATAAAACTGGTTCTGGTTCTGCTGGTGAACCTTTGGCTACAACTTCTGATAAGAGTAACTGCTGTAACTCTTCTGCTGCTGCTGCTGCAGCTGATGTGTCTGTATCTGAGAAGTTTTCTACTACTTCTGATGACATAGAAGAGAGTGTGTTGCCACACAATTcaccaccgtctgtcattgagaaggggctagagataccagatttgagtctgttgaacttgccaccaccaccatctACTGCTGGTGCTGCTGTTCCATCTGGGATTGAGCCAAACTCGGGGCTTGATTTTGATTGGCTATCGTTTGATGATTATGAACAGGTTTTTGATGATTTTGGTGGCTTGGAAGATATTCATATTAGTGGGTTTGATGACAATGAGCCTAGTGAGCTTCCTGATTTTGATTTTGGTGATTTTGATGCTGATTAG 939 0.3951 MPECQKQPASRPKQKLHSLQESKAMRKLRIICDDPDATDSSDDDSKRIQNPRIVKRSMCEISLLPLLHTFTTLETSSCELNNKKNTMRVSTKGQPQSKKRVLTHTPSTRRKTPGKYRGVRQRKWGKWASEIYNPFQNNRIWLGTFNTAEEASQVYEARRLELEAMAKAQAYKTGSGSAGEPLATTSDKSNCCNSSAAAAAADVSVSEKFSTTSDDIEESVLPHNSPPSVIEKGLEIPDLSLLNLPPPPSTAGAAVPSGIEPNSGLDFDWLSFDDYEQVFDDFGGLEDIHISGFDDNEPSELPDFDFGDFDAD 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01566 312 MobiDBLite consensus disorder prediction 298 312 - -
Gma17g01566 312 SUPERFAMILY DNA-binding domain 115 162 IPR016177 GO:0003677
Gma17g01566 312 Pfam AP2 domain 115 164 IPR001471 GO:0003700|GO:0006355
Gma17g01566 312 CDD AP2 115 157 IPR001471 GO:0003700|GO:0006355
Gma17g01566 312 Gene3D AP2/ERF domain 114 171 IPR036955 GO:0003700|GO:0006355
Gma17g01566 312 PRINTS Ethylene responsive element binding protein signature 116 127 IPR001471 GO:0003700|GO:0006355
Gma17g01566 312 PRINTS Ethylene responsive element binding protein signature 138 154 IPR001471 GO:0003700|GO:0006355
Gma17g01566 312 SMART rav1_2 115 178 IPR001471 GO:0003700|GO:0006355
Gma17g01566 312 MobiDBLite consensus disorder prediction 103 119 - -
Gma17g01566 312 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 237 302 - -
Gma17g01566 312 MobiDBLite consensus disorder prediction 1 24 - -
Gma17g01566 312 ProSiteProfiles AP2/ERF domain profile. 115 172 IPR001471 GO:0003700|GO:0006355
Gma17g01566 312 PIRSF PTI6 259 308 IPR017392 GO:0003700
Gma17g01566 312 PIRSF PTI6 4 245 IPR017392 GO:0003700
Gma17g01566 312 MobiDBLite consensus disorder prediction 87 119 - -
Gma17g01566 312 MobiDBLite consensus disorder prediction 290 312 - -
Gma17g01566 312 MobiDBLite consensus disorder prediction 87 102 - -
Gma17g01566 312 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 237 302 - -
Gma17g01566 312 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 13 232 - -
Gma17g01566 312 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 13 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01566 Gma-Chr17 16149062 16150177 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01566 13 310 AP2-EREBP Transcription Factor Family AT1G68550 35.873 3.15e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma17g01566 AP2 3.5e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01566 - - gsj:114421068 422.935