Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01564 ATGGAAGGAGAAGAAGGAGGAATTGCAACAAAGAAGAGAGGGAAAGAGGGTGAAACTGAGACGACGCGCTACAAAGGAATCAGAATGAGAAAGTGGGGCAAGTGGGTCGCTGAGATTCGAGAACCCAACAAGCGTTCAAGGATTTGGCTCGGTTCTTACTCCACGCCCGTCGCGGCGGCGCGTGCTTACGACACCGCCGTTTTCCACCTCCGGGGCCCCTCTGCGCGCCTCAACTTCCCCGAGCTTGTTGCCGCGGAGGGCCCCGCCGCCGACATGTCCGCAGCCTCCATCAGGAAGAAGGCCACCGAGGTCGGCGCCAGAGTCGACGCTCTCCACCGCCAGCACCCCCACGCGCTGCCTGCTGGAGAATTCGCCGACCGGGTTGACCTTAATAAGATGCCCGAACCCGAGAATTCGGATTGTGACTACTGGGACAGGGATTAG 444 0.5991 MEGEEGGIATKKRGKEGETETTRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFHLRGPSARLNFPELVAAEGPAADMSAASIRKKATEVGARVDALHRQHPHALPAGEFADRVDLNKMPEPENSDCDYWDRD 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01564 147 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Gma17g01564 147 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Gma17g01564 147 PRINTS Ethylene responsive element binding protein signature 62 82 IPR001471 GO:0003700|GO:0006355
Gma17g01564 147 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677
Gma17g01564 147 Gene3D AP2/ERF domain 22 82 IPR036955 GO:0003700|GO:0006355
Gma17g01564 147 Pfam AP2 domain 22 72 IPR001471 GO:0003700|GO:0006355
Gma17g01564 147 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 10 140 - -
Gma17g01564 147 CDD AP2 22 82 IPR001471 GO:0003700|GO:0006355
Gma17g01564 147 MobiDBLite consensus disorder prediction 1 23 - -
Gma17g01564 147 MobiDBLite consensus disorder prediction 115 147 - -
Gma17g01564 147 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01564 Gma-Chr17 16108889 16110066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01564 7 142 AP2-EREBP Transcription Factor Family AT2G23340 58.861 1.87e-53 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma17g01564 AP2 1.3e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01564 K09286 - gmx:100784157 306.219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01914 01 54687613 54688506 Gma17g01564 17 16108889 16110066 PCT
Gma11g00490 11 4088754 4089287 Gma17g01564 17 16108889 16110066 PCT
Gma17g01564 17 16108889 16110066 Gma01g01914 01 54687613 54688506 PCT
Gma17g01564 17 16108889 16110066 Gma11g00490 11 4088754 4089287 PCT