Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01549 ATGGCTCTCGGCGACGATGCGCAGCACCACTCTCCCTCGTTCCTCGATGCCCTTCTCTGCGAAGAGCGAGAAACCTTCGAGGAAGACTTTGATGAGAACGGTTATGAGCGTGAGACCGAAAACAACGAACCCTCTGTGATAAAGTCGCAATCTTTGCCCTTGGTTTTGCACGATAATGACCTGTTCTGGGAAGACGAAGAGCTCGTGTCGTTAATCGCGAAAGAGGGAGAGACCCATTTGTGTTTTCATGGTGTCGTTGCTAATGGGGCCTTGGAAGGGCCTCGTGTTGAGGCTGTGAACTGGATTTCGAAAGTTTGTGGGCACTATGGGTTCTCCGCTTTGACAACTGTTCTCGCTGTTAACTACTTTGATAGGTTCATCACAAGTTTGAAGTTTCAGAACGATAAGCCGTGGATGACACAGCTCACTGCTGTTGCTTGTTTGTCCCTTGCTGTGAAAACGGAAGAGACCCATGTGCCACTCCTCTTGGACCTTCAAGTGGAGGAGTCAAGGTTTGTGTTTGAGGCAAAGACTATTCAGAGAATGGAGCTGCTGGTGCTGTCAACTCTTAAGTGGAGGATGCATCCGGTGACCCCAATTTCCTTCTTTGAACACATTGTGAGAAGGCTTGGTTTGAAGAGTCGCTTGCATTGGGAGTTTCTATGGCGTTGTGAGCGTGTTCTTCTCAATGTCATTGCCGATTCAAGGGTTATGAGTTATCTTCCTTCTACATTGGCTGCTGCGACAATGATCCGTGTTATTAAAGAGATTGAATCATTTAATGCGACCGAGTACATTGATCAGCTTCTGGGTTTACTAAAGATTAGTGAGGAACAAGTGAACCAGTGCTACAAAATCATACAGAAACTATTAGGTTGCTATGAAGGCATTTACAGCCTTCACCAGAAACGCAAGCGACTATCTGAACCGGGTAGCCCAGGTGCTGTCACTGATGCATCTTTCAGTTGTGATAGCTCAAATGATTCATGGACCGTGTCATCATCAGTCTCACTTTCACTGGAGCCGCTGTTGAAGAGGAGAAAATCTCAGGACCAGCAAATGCGACTGCCTTCTGTCAATTGTGTGTCAATTGATGTTCTTAATAGCCCTCGCTAA 1116 0.4668 MALGDDAQHHSPSFLDALLCEERETFEEDFDENGYERETENNEPSVIKSQSLPLVLHDNDLFWEDEELVSLIAKEGETHLCFHGVVANGALEGPRVEAVNWISKVCGHYGFSALTTVLAVNYFDRFITSLKFQNDKPWMTQLTAVACLSLAVKTEETHVPLLLDLQVEESRFVFEAKTIQRMELLVLSTLKWRMHPVTPISFFEHIVRRLGLKSRLHWEFLWRCERVLLNVIADSRVMSYLPSTLAAATMIRVIKEIESFNATEYIDQLLGLLKISEEQVNQCYKIIQKLLGCYEGIYSLHQKRKRLSEPGSPGAVTDASFSCDSSNDSWTVSSSVSLSLEPLLKRRKSQDQQMRLPSVNCVSIDVLNSPR 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01549 371 Pfam Cyclin, N-terminal domain 95 194 IPR006671 -
Gma17g01549 371 Gene3D - 196 285 - -
Gma17g01549 371 SMART Cyclin_C_2 197 324 IPR004367 -
Gma17g01549 371 Pfam Cyclin, C-terminal domain 197 293 IPR004367 -
Gma17g01549 371 SMART cyclin_7 100 188 IPR013763 -
Gma17g01549 371 CDD CYCLIN 95 187 IPR013763 -
Gma17g01549 371 Gene3D - 94 195 - -
Gma17g01549 371 SUPERFAMILY Cyclin-like 63 195 IPR036915 -
Gma17g01549 371 PANTHER CYCLINS 8 354 IPR039361 -
Gma17g01549 371 PANTHER CYCLIN-D3-2 8 354 - -
Gma17g01549 371 SUPERFAMILY Cyclin-like 198 297 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01549 Gma-Chr17 15735804 15737772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01549 7 360 Core Cell Cycle Gene Families AT5G67260 51.934 5.28e-114 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01549 K14505 - gmx:100785030 701.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01549 17 15735804 15737772 Gma05g00959 05 27991145 27992594 GST
Gma17g01549 17 15735804 15737772 Gma01g01926 01 54777639 54778932 PCT
Gma17g01549 17 15735804 15737772 Gma11g00479 11 4013612 4015682 PCT