Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01540 ATGGAAGCAATTCCTTATTCAATCCCCTCCACCAAATTGCACTCATCTCTTCATATTTACACCGGCGTTACACGAATTCGATCCCTCCCTCTTCGCCCTCCCCCAATCTCAATCAAACCTCTATATTCCCCCAATTTCCTCATTCTCCATCGCCACAGACTTCGCTGCGTCGCTGAATCCTCCAATAATCATCATCATCATGACCACGACCATCACCACGGCCACCACCACCACCATCATCATCATCACCACTCCCACGGTGCTAATCTCACCGGGCCTCAAAAAGCTGTCATCGCTTTCGCCAAAGCCACCAGATGGATGGACCTGGCAGACATCCTGAGGGAGCACCTGCATCTTTGCTGCTTCTCCACCGCTCTCTTCGTCGCCGCCGCAATTTGCCCTCACACCTTGCCCAAGCCACTCGTCAAGCCTCTTCAAAACTCCCTCATCTTCGTCGCCTTCCCTCTGGTTGGGGTTTCTGCATCACTTGACGCTCTCATAGAAATCAGCAGCGGAAAGGTGAACATCCATGTTCTGATGGCTATGGCAGCCTTTGCATCGATATTCATGGGAAACTCTTTGGAAGGAGGCCTGCTTCTTGCCATGTTTAACCTCGCGCATATCGCCGAAGAGTATTTCACCAGCCGGTCGATGGTTGATGTTAGGGAGTTGAAAGAAAATAATCCAGATTTCGCCCTTGTTCTGGATACCAATGATGATGATAAACTCCCCAATACGTTTGACTTGGCATACAAGAGGGTTCCCGTGCATGATGTGACTGTAGGATCATTTATTCTGGTTGGCACCGGCGAGTCTGTGCCAGTAGATTGTGAAGTATTCCAAGGCAGTGCCACAATTACCATCGAGCACTTGACAGGGGAAGTCAAACCTTTGGAAGCCAAAGTTGGAGATAGAATTCCTGGTGGTTCAAGGAACTTAGATGGGAGGATAATTGTGGAGGTAATGAAAACTTGGAAGGAATCAACTCTCAGCAGAATTGTTCAGTTAACTGAAGAAGCACAGTCAAATAAACCTAAACTTGAAAGGTGGCTGGATGAATTTGGTGAACGTTATAGCCAAGTTGTTGTGGTGTTATCAATTGCTATTGCTGTTATTGGGCCATTTTTATTTAAGTGGCCATTCGTTAGTACATCCGCTTGCAGAGGTTCAATTTACAGAGCCTTAGGGCTTATGGTGGCAGCATCCCCTTGTGCCTTGGCTGTGGCCCCATTGGCATATGCTATAGCAATCAGTTCCTGTGCCAGAAAGGGGATATTACTCAAAGGTGGGCATGTTCTGGATGCTCTTGCTTCTTGTCATACTATTGCATTTGACAAAACAGGGACATTGACCACTGGTGGACTCGTATTCAAGGCAATTGAGCCCATTTATGGTCATCATGTTAGAAACAACGAATCAAATGTTCCTTCGTGTTGCATTCCCACCTGTGAAAAAGAAGCTCTTGCTGTTGCTTCAGCAATGGAAAAGGGTACCACTCACCCTATTGGAAGGGCTGTGGTTGACCATAGTGAAGGCAAAGACCTCCCATCTGTTTCTGTTGAAAGTTTCGAATACTTTCCTGGTAGAGGCCTTACTGCTACTGTTAACAGCATTGAGTCAGGAACTGGAGGTGCTAAACTATTGAAAGCATCACTTGGGTCAATAGATTTCATCACCTCTTTATGTCAATCTGAAGATGAGTCAGAAAAGATCAAGGAAGCTGTTAATACATCTTCTTATGGAAGTGAATATGTTCATGCTGCCCTTTCAGTTAATCAGAAGGTAACATTGATTCATCTAGAGGATAGGCCACGTCCTGGGGTTGTTAATGTTATTCAAGAATTGCAAGATGAAGCAAAGTTACGTGTGATGATGTTAACTGGTGATCATGAGTCTAGTGCAAGGCGAGTTGCAAGTGGTGTGGGCATCAATGAGTTTCATTGCAACCTGAAGCCTGAAGATAAGCTGAGTCATGTAAAGGATATCTCAAGAGATATGGGGGGAGGCTTAATTATGGTCGGTGAAGGCATCAATGATGCCCCAGCACTAGCTGCTGCAACTGTTGGGATAGTTCTTGCTCACCGAGCTAGTGCAACTGCCATCGCTGTTGCCGATGTATTGTTGCTTAGAGAAAGCATTTCTGCAGTGCCATTTTGTATTGCCAAGTCTCGCCAAACAACTTCACTGATTAAACAAAATGTAGCTTTAGCATTGACGTCCATTCTCATGGCTTCCCTTCCATCAGTTTTGGGATTTCTGCCATTGTGGTTAACGGTTCTTTTACATGAAGGTGGAACCCTGCTTGTCTGTCTCAATTCCGTACGTGCTCTGAATGAACCATCTTGGTCCTGGAAGCATGATATATTCCATTTGATTAGCGAGATTAAATCTAGACTCCTGTCTCTCAAGACAAATATCACGGGCTCAAACAGTATCATAACGACGAATTTGTAA 2454 0.454 MEAIPYSIPSTKLHSSLHIYTGVTRIRSLPLRPPPISIKPLYSPNFLILHRHRLRCVAESSNNHHHHDHDHHHGHHHHHHHHHHSHGANLTGPQKAVIAFAKATRWMDLADILREHLHLCCFSTALFVAAAICPHTLPKPLVKPLQNSLIFVAFPLVGVSASLDALIEISSGKVNIHVLMAMAAFASIFMGNSLEGGLLLAMFNLAHIAEEYFTSRSMVDVRELKENNPDFALVLDTNDDDKLPNTFDLAYKRVPVHDVTVGSFILVGTGESVPVDCEVFQGSATITIEHLTGEVKPLEAKVGDRIPGGSRNLDGRIIVEVMKTWKESTLSRIVQLTEEAQSNKPKLERWLDEFGERYSQVVVVLSIAIAVIGPFLFKWPFVSTSACRGSIYRALGLMVAASPCALAVAPLAYAIAISSCARKGILLKGGHVLDALASCHTIAFDKTGTLTTGGLVFKAIEPIYGHHVRNNESNVPSCCIPTCEKEALAVASAMEKGTTHPIGRAVVDHSEGKDLPSVSVESFEYFPGRGLTATVNSIESGTGGAKLLKASLGSIDFITSLCQSEDESEKIKEAVNTSSYGSEYVHAALSVNQKVTLIHLEDRPRPGVVNVIQELQDEAKLRVMMLTGDHESSARRVASGVGINEFHCNLKPEDKLSHVKDISRDMGGGLIMVGEGINDAPALAAATVGIVLAHRASATAIAVADVLLLRESISAVPFCIAKSRQTTSLIKQNVALALTSILMASLPSVLGFLPLWLTVLLHEGGTLLVCLNSVRALNEPSWSWKHDIFHLISEIKSRLLSLKTNITGSNSIITTNL 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01540 817 Pfam haloacid dehalogenase-like hydrolase 441 686 - -
Gma17g01540 817 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 55 803 - -
Gma17g01540 817 SUPERFAMILY HAD-like 441 773 IPR036412 -
Gma17g01540 817 ProSitePatterns E1-E2 ATPases phosphorylation site. 445 451 IPR018303 -
Gma17g01540 817 MobiDBLite consensus disorder prediction 67 88 - -
Gma17g01540 817 SFLD C1.7: P-type atpase like 425 726 - -
Gma17g01540 817 Gene3D - 214 341 - -
Gma17g01540 817 Gene3D - 454 604 IPR023299 GO:0000166
Gma17g01540 817 SUPERFAMILY Calcium ATPase, transmembrane domain M 178 758 IPR023298 -
Gma17g01540 817 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 250 467 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma17g01540 817 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 553 753 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma17g01540 817 PRINTS P-type cation-transporting ATPase superfamily signature 443 457 - -
Gma17g01540 817 PRINTS P-type cation-transporting ATPase superfamily signature 596 607 - -
Gma17g01540 817 PRINTS P-type cation-transporting ATPase superfamily signature 619 629 - -
Gma17g01540 817 PRINTS P-type cation-transporting ATPase superfamily signature 673 692 - -
Gma17g01540 817 PRINTS P-type cation-transporting ATPase superfamily signature 697 709 - -
Gma17g01540 817 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 176 775 IPR027256 GO:0006812|GO:0016021|GO:0019829
Gma17g01540 817 Gene3D - 436 724 IPR023214 -
Gma17g01540 817 SFLD p-type atpase 425 726 IPR044492 -
Gma17g01540 817 CDD P-type_ATPase_HM 126 775 - -
Gma17g01540 817 Pfam E1-E2 ATPase 251 423 - -
Gma17g01540 817 SUPERFAMILY Calcium ATPase, transduction domain A 251 336 IPR008250 -
Gma17g01540 817 MobiDBLite consensus disorder prediction 60 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01540 Gma-Chr17 15489587 15503635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01540 93 798 Primary Pumps ATPases AT4G37270 77.054 0.0 1100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01540 K01534 - gmx:100776309 1522.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01540 17 15489587 15503635 Gma05g00979 05 28565868 28576625 GST