Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01523 ATGTCTGGGAGCCACCAAGAGCAGCCACTGTTAGAGAACTCGTTCATAGAAGAAGACGAGCCGCAAGAAACAGCTTATGATTCGTCGGAGAAGATAGTGGTGGTCGGAGTCGACGAGTCCGATGACGAGGAGAATTGGGGGAGAGTGCCCCGATTCTCGTGGAAGAAGCTATGGCTGTTCACCGGGCCGGGCTTTCTGATGAGCATAGCGTTTCTGGACCCTGGAAACTTAGAGGGGGACCTTCAGGCGGGTGCCATTGCAGGGTACTCATTGTTGTGGCTTCTGATGTGGGCCACAGCAATGGGCCTCCTGATCCAGCTCCTCTCGGCACGGCTCGGCGTGGCCACAGGGAAGCACCTCGCCGAGCTCTGCCGAGAGGAGTATCCTCCGTGGGCCCGGATAGTGCTCTGGATCATGGCGGAACTCGCTCTCATTGGCTCCGATATTCAGGAGGTTATTGGGAGCGCTATTGCAATCAGGATTCTTAGTCATGGGGTTGTGCCCCTTTGGGCTGGGGTTGTCATTACTGCTCTTGATTGTTTTATTTTTCTCTTTCTTGAGAACTATGGTGTGAGGACTTTGGAAGCTTTTTTTGCTATTCTCATTGGTGTGATGGCAATCTCGTTCGCATGGATGTTTGGTGAAGCCAAGCCCAGTGGCAAGGAACTTCTTCTTGGAGTTTTGATTCCAAAACTCAGCTCCAAAACTATACAGCAGGCTGTTGGAGTTGTGGGGTGCCTTATTATGCCTCACAATGTGTTCTTGCACTCTGCTCTTGTTCAGTCAAGGCAGGTTGACCGCAGCAAGAAAGGCCGAGTTCAAGAAGCTCTTAATTATTACTCGATAGAGTCCACCCTTGCCCTTGTAGTTTCCTTTATTATAAATATTTTTGTAACAACAGTGTTTGCTAAGGGATTTTATGGCTCTGAACTTGCAAACAGCATAGGTCTTGTAAATGCAGGACAGTATCTAGAGGAGACATATGGGGGTGGACTATTTCCAATTTTATACATATGGGGTATTGGATTATTAGCAGCAGGCCAAAGTAGCACTATTACTGGGACTTATGCAGGACAATTCATCATGGGAGGTTTTCTAAATTTAAGGTTAAAGAAGTGGATGAGGGCGTTGATTACCCGAAGTTGTGCAATAATTCCAACTATGATAGTTGCTCTTTTATTCGATACCTCGGAGGAATCGTTAGATGTTTTGAATGAGTGGCTTAATGTTCTTCAGTCAGTCCAGATCCCCTTTGCACTTATTCCCTTGCTTTGTCTGGTGTCAAAGGAGCAGATAATGGGCACTTTCAGAATTGGTGCTGTCCTCAAGACTACTTCATGGCTCGTGGCTGCTCTGGTGATAGTGATTAATGGCTATCTTTTGACGGAATTCTTTTCCTCTGAAGTGAATGGACCAATGATTGGCACTGTAGTGGGTGTAATAACTGCTGCATATGTTGCCTTCGTAGTATACCTTATTTGGCAAGCCATCACCTATTTACCTTGGCAAAGTGTAACACAACCAAAGACAATTGCTCATTCAGAGGGTTGA 1551 0.4674 MSGSHQEQPLLENSFIEEDEPQETAYDSSEKIVVVGVDESDDEENWGRVPRFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATAMGLLIQLLSARLGVATGKHLAELCREEYPPWARIVLWIMAELALIGSDIQEVIGSAIAIRILSHGVVPLWAGVVITALDCFIFLFLENYGVRTLEAFFAILIGVMAISFAWMFGEAKPSGKELLLGVLIPKLSSKTIQQAVGVVGCLIMPHNVFLHSALVQSRQVDRSKKGRVQEALNYYSIESTLALVVSFIINIFVTTVFAKGFYGSELANSIGLVNAGQYLEETYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSCAIIPTMIVALLFDTSEESLDVLNEWLNVLQSVQIPFALIPLLCLVSKEQIMGTFRIGAVLKTTSWLVAALVIVINGYLLTEFFSSEVNGPMIGTVVGVITAAYVAFVVYLIWQAITYLPWQSVTQPKTIAHSEG 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01523 516 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 55 433 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gma17g01523 516 Hamap Divalent metal cation transporter MntH [mntH]. 43 465 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gma17g01523 516 PRINTS Natural resistance-associated macrophage protein signature 136 162 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gma17g01523 516 PRINTS Natural resistance-associated macrophage protein signature 166 185 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gma17g01523 516 PRINTS Natural resistance-associated macrophage protein signature 191 212 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gma17g01523 516 PRINTS Natural resistance-associated macrophage protein signature 240 263 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gma17g01523 516 PRINTS Natural resistance-associated macrophage protein signature 347 366 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gma17g01523 516 PRINTS Natural resistance-associated macrophage protein signature 375 392 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gma17g01523 516 PRINTS Natural resistance-associated macrophage protein signature 409 428 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gma17g01523 516 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 14 514 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gma17g01523 516 PANTHER METAL TRANSPORTER NRAMP3 PROTEIN 14 514 - -
Gma17g01523 516 MobiDBLite consensus disorder prediction 1 28 - -
Gma17g01523 516 Pfam Natural resistance-associated macrophage protein 78 439 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01523 Gma-Chr17 15135044 15139687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01523 31 502 Inorganic Solute Cotransporters AT2G23150 78.737 0.0 775
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01523 K21398 - gmx:547711 1014.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01523 17 15135044 15139687 Gma05g01020 05 29466849 29471754 GST
Gma01g01936 01 54853111 54856657 Gma17g01523 17 15135044 15139687 PCT
Gma11g00470 11 3899120 3902470 Gma17g01523 17 15135044 15139687 PCT
Gma17g01523 17 15135044 15139687 Gma01g01936 01 54853111 54856657 PCT
Gma17g01523 17 15135044 15139687 Gma11g00470 11 3899120 3902470 PCT