Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01506 ATGCGCATTGCGCACGAAGCACCAGCAGCACTACTTCTCCGCTTCTTGCTAGTGTGCACCATTGTCGCCTTGCGTGCGCCGGTTGCGCAGCCCCCTATCTTGCGCATCCCCAATCACCTCATCGAAACTACTAACACCTTCACAATCGTTCACCAGCGCTACAGAACCCAGATCTCGGGTTCCAATCGTCGAGCCATGTCCAAGGCACGCGTCTACACCGATGTCAATGTTCTTCGCCCCAAAGAGTACTGGGATTACGAGTCCCTCACCGTTCAATGGGGTGATCAAGATGATTATGAGGTTGTGCGCAAAGTGGGAAGGGGAAAGTACAGTGAGGTTTTTGAAGGCATAAATGTTAATAGCAATGAGCGTTGTGTAATCAAGATTCTCAAGCCTGTCAAGAAAAAGAAGATTAAAAGAGAGATAAAAATACTTCAGAACCTTTGTGGGGGGCCAAATATTGTCAAGCTTCTTGATATTGTCAGAGATCAGCACTCTAAAACTCCTAGCTTAATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTTCTTAAGGCCTTAGATTACTGTCATTCTCAAGGCATAATGCATAGAGATGTCAAGCCTCATAATGTTATGATAGATCATGAATTACGGAAACTTCGCTTGATAGATTGGGGTCTTGCTGAATTTTATCATCCTGGAAAGGAATACAATGTTCGTGTGGCTTCAAGATACTTTAAGGGCCCTGAACTTCTAGTTGATTTACAAGACTATGACTACTCATTAGACATGTGGAGTCTTGGCTGCATGTTTGCTGGAATGATATTTCGCAAGGAACCTTTTTTTTATGGTCACGACAACCATGATCAGCTTGTCAAAATAGCTAAGGTGCTTGGGACAGATGAACTGAATGCATATCTGAATAAGTATCATCTGGAGCTTGATCCTCAACTTGATGCACTGGTTGGAAGGCACAGTCGCAAGCCTTGGTCTAAATTTATCAATGCAGATAATCAACATCTTGTGTCTCCTGAGGCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGCTAACAGCAAGAGAAGCAATGGCACATCCATATTTCTCTCAAGTAAGGGCAGCTGAAAGTAGCAGAATGAGGACACAGTAA 1197 0.4277 MRIAHEAPAALLLRFLLVCTIVALRAPVAQPPILRIPNHLIETTNTFTIVHQRYRTQISGSNRRAMSKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCVIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRMRTQ 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01506 398 ProSiteProfiles Protein kinase domain profile. 99 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g01506 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Gma17g01506 398 SMART serkin_6 99 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g01506 398 SUPERFAMILY Protein kinase-like (PK-like) 69 388 IPR011009 -
Gma17g01506 398 PANTHER CASEIN KINASE II SUBUNIT ALPHA 5 398 IPR045216 GO:0004674|GO:0006468
Gma17g01506 398 Pfam Protein kinase domain 99 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g01506 398 CDD STKc_CK2_alpha 80 384 IPR045216 GO:0004674|GO:0006468
Gma17g01506 398 PANTHER CASEIN KINASE II SUBUNIT ALPHA-3 5 398 - -
Gma17g01506 398 Gene3D Phosphorylase Kinase; domain 1 99 175 - -
Gma17g01506 398 Gene3D Transferase(Phosphotransferase) domain 1 176 384 - -
Gma17g01506 398 ProSitePatterns Protein kinases ATP-binding region signature. 105 128 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01506 Gma-Chr17 14853916 14861390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01506 97 384 Core Cell Cycle Gene Families AT1G76540 29.450 7.28e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Gma17g01506 Pkinase 4.9e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01506 K03097 - gmx:100820471 788.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01951 01 54960655 54967743 Gma17g01506 17 14853916 14861390 PCT
Gma11g00455 11 3804574 3810571 Gma17g01506 17 14853916 14861390 PCT
Gma17g01506 17 14853916 14861390 Gma01g01951 01 54960655 54967743 PCT
Gma17g01506 17 14853916 14861390 Gma11g00455 11 3804574 3810571 PCT