Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01493 ATGAGTTGCAACGGGTGCCGCGTTCTTCGAAAGGGATGCAGCGAGTCCTGTATTTTGCGACCTTGTTTGCAGTGGATCGAAACCGCCGAAGCCCAAGGCCACGCCACTGTCTTCGTCGCCAAATTCTTTGGCCGCGCCGGCCTCATGTCCTTCATTTCCAACGTTCCAGAAAATCAAAGACCTGCTCTGTTTCAGTCGCTGCTCTTCGAAGCGTGTGGCAGAACGGTGAACCCTGTGAACGGTGCCGTGGGGCTTCTCTGGACTGGGAACTGGCACGTGTGCCAGGCCGCGGTCGAGACGGTGCTCCGCGGCGGCACGCTGAGGCCCATGCCGGAGCTCATGGGCCTCGACGCTGCCGCTGCCGCCGCGGCCGCCGCCGACGAAACATCGGAGGCCGAAGTCGGATGCACCGACACGTGGAGGATCCGAAACCCGAACACGAATTGCCGGTTCACAAGCTCGCGATCCTCCTCCGGCGGCGGCGGTGGTAAACGCAAGCGGTCGGAGGAGCTGGCAAAGCTTCAGGAGCAGCAGCCGAATCTCGATCTCCGGCTGACGCCGGTTTTCTTGCAGAAGGAGGAGAGCCGCCGGCCAGAGTCTCCGTCGATGACCTCCGAGGAGTCCGGAACGACGACGGAGAACAGATTTGGGGATCAGTGGAGTCACTGGAAAGTTCTCAACCTTTTCATTTGA 693 0.6089 MSCNGCRVLRKGCSESCILRPCLQWIETAEAQGHATVFVAKFFGRAGLMSFISNVPENQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPMPELMGLDAAAAAAAAADETSEAEVGCTDTWRIRNPNTNCRFTSSRSSSGGGGGKRKRSEELAKLQEQQPNLDLRLTPVFLQKEESRRPESPSMTSEESGTTTENRFGDQWSHWKVLNLFI 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01493 230 MobiDBLite consensus disorder prediction 147 161 - -
Gma17g01493 230 MobiDBLite consensus disorder prediction 202 216 - -
Gma17g01493 230 MobiDBLite consensus disorder prediction 147 170 - -
Gma17g01493 230 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 230 - -
Gma17g01493 230 MobiDBLite consensus disorder prediction 190 216 - -
Gma17g01493 230 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Gma17g01493 230 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 230 - -
Gma17g01493 230 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01493 Gma-Chr17 14398068 14399519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01493 1 229 AS2 family AT3G49940 58.400 2.24e-86 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gma17g01493 LOB 1.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01493 - - gmx:100818328 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01493 17 14398068 14399519 Gma01g01956 01 55016586 55017936 PCT
Gma17g01493 17 14398068 14399519 Gma11g00450 11 3757934 3759228 PCT