Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01486 ATGGAGAGTTATTTGCATGAGAATTTTGGAGGAGTGAAATCCAAAAACACTACTGAAGAGGCTCTTCAGAAATGGAGGAAGGTATGTGGGGTTGTAAAGAACCCGAAACGACGCTTTCGTTTCACTGCCAACATCTCCAAGCGCTCCGAAGCAGCTGCTATGCGTCGTACCAATCAGGAGAAGCTAAGGGTTGCTGTTTTGGTTTCCAAAGCTGCATTTCAATTTATCCAAGGTGTTCAACCGAGCGATTATGTGTTACCTGACGAAGTAAAAGCTGCGGGTTTCCAAATCTGTGCTGAAGAACTGGGGTCTATTGTTGAAGGCCATGACGTAAAGAAGCTTAAGTTTCATGGTGGAGTAGATGGCATTGCAGGAAAGCTTTCAACATCAACCACCACGGGGCTTAGCGGTGATTCTGAATCACGGCACAGGAGACAAGAGCTTTTTGGAGTCAATAAATTCACCGAAAGCGAAGTTCGGAGTTTCTGGATTTTTGTTTATGAAGCCCTTCAAGACATGACTCTCATGATCCTAGGAGTGTGTGCTTTTGTGTCTCTGATAGTTGGCATAGCAACGGAAGGATGGCCTAAAGGTGCTCATGATGGACTTGGAATCGTTGCAAGTATCTTACTAGTTGTCTTCGTGACAGCAATGAGCGATTATCGCCAATCGTTGCAATTCAAGGACTTAGACAAGGAGAAGAAAAAGATTTCCATTCAGGTCACAAGAAACGGTTACAGGCAGAAAATGTCAATATATAGTTTACTCCCTGGTGACCTTGTGCATCTTTCTATTGGAGACCAAGTCCCTGCAGATGGTTTATTTGTTTCAGGGTTTTCTGTGTTGATTGATGAGTCGAGTTTAACCGGTGAGAGTGAGCCGGTGATGGTGACTTCCCAAAATCCTTTTCTTCTCTCTGGAACCAAGGTCCAAGATGGATCTTGCACCATGTTGATTACCACTGTTGGGATGAGGACTCAATGGGGCAAGTTGATGGCAACTCTGAGTGAAGGTGGAGATGATGAAACCCCATTGCAGGTGAAACTGAATGGAGTAGCAACCATCATTGGGAAGATAGGACTTGTCTTTGCCGTAATTACCTTTGCAGTTTTGGTGAAAGGACTAATGGGCCGCAAACTCCAAGAAGGAAGATTCTGGTGGTGGTCCGCGGACGATGCACTGGAGATGTTAGAATTCTTCGCCATTGCAGTTACCATTGTTGTTGTTGCTGTTCCGGAGGGGTTACCCTTAGCTGTGACATTGAGTCTTGCATTCGCAATGAAGAAGATGATGAATGACAAGGCCTTGGTGAGGCATTTGGCAGCATGTGAAACCATGGGATCAGCCACAACTATATGCAGTGACAAGACTGGGACACTAACAACCAACCGCATGACTGTGGTGAAAACATGCATCTGTATGAATATCAAGGAAGTGACTAGTAATGATTCCACTTTGTCCAGTGAACTCCCAGATTCTACTTTGAAAATGTTGCTTCAGTCAATCTTTAGTAACACTGGAGGAGAGGTTGTGGTTAACAAAAAGGGTAAGCGCGAAATCTTGGGGACTCCAACAGAGTCAGCACTATTGGAGTTTGGCTTATCACTGGGAGGGGATTTTCATGCAGAGAGACAAACATGTAAAGTTGTTAAAGTTGAGCCATTCAACTCTGAGAGGAAAAGAATGGGTGTGGTTTTGGAGATCCCTGGAGGAGGTTTAAGGGCTCATAGTAAAGGTGCTTCGGAAATCATTTTGGCTGCTTGTGACAAGGTGATCAACTCGAACGGCGATGTTGTCTCCATCGATGAAGAATCAAGTAATTATCTGAATAGTACAATCGACCAGTTTGCTGGTGAGGCACTTAGAACTCTTTGCCTTGCATATTTGGAATTGGAAAACGGGTTTTCCACGGAAGACCCTATTCCTGTTTCTGGCTACACGTGTGTAGGAATTGTTGGCATCAAAGATCCTGTTCGTCCTGGCGTTAAGGAATCGGTTGAAGTGTGTCGTTCGGCTGGAATCGTGGTGAGAATGGTTACAGGAGACAATATTAATACTGCAAAGGCCATAGCCAGGGAATGTGGGATTTTAACAGATGATGGAATAGCCATTGAGGGTCCAGACTTTAGAGAGAAGACTCAGGAAGAATTGTTTGAACTGATTCCCAAAATTCAGGTTATGGCTCGATCCTCACCTCTAGACAAACATACACTGGTGAAACACCTACGTACCACGTTCGGGGAAGTCGTAGCTGTAACTGGTGATGGAACAAATGATGCTCCGGCCCTTCATGAAGCTGATATTGGACTTGCAATGGGAATTGCTGGAACTGAGGTTGCTAAAGAAAGTGCAGATGTCATAATTCTGGATGATAATTTCTCCACAATAGTGACAGTGGCCAAATGGGGACGTTCAGTTTACATAAATATTCAAAAATTCGTACAGTTCCAGCTTACTGTAAATGTGGTTGCATTACTAGTAAACTTCTCATCAGCATGCATGACAGGCAGTGCACCCCTCACAGCTGTTCAACTTTTGTGGGTGAACATGATAATGGACACGCTGGGAGCACTTGCACTTGCAACTGAACCTCCAACCGATGATTTAATGAAGCGCATGCCAGTGGGGAGGAAGGGTGAATTCATCAACAATGTCATGTGGAGGAATATCTTAGGACAAGCATTGTATCAGTTTGTGGTGATATGGTTCCTTCAGTCAGTAGGAAAATGGGTCTTTTTTCTCCGAGGCCCGAATGCTGAAGTGGTCTTAAACACACTTATTTTCAACACATTTGTATTCTGTCAGGTTTTCAATGAGGTCAACTCTCGCGAGATGGAGGATACAGATGTTTTTAAAGGCATATGGGATAATCATGTGTTCATCGGTGTCCTTGGTGCAACGGTTTTCTTTCAAATCCTAATAGTTGAGTACTTGGGAACCTTTGCCAACACAACCCCTCTAAGTCTGGTACAATGGATCTTTTGCTTAGGAGCTGGGTATGTGGGTCTGCCACTTGCAGTTCGCTTAAAGCAGATCCCAGTCTGA 3045 0.4433 MESYLHENFGGVKSKNTTEEALQKWRKVCGVVKNPKRRFRFTANISKRSEAAAMRRTNQEKLRVAVLVSKAAFQFIQGVQPSDYVLPDEVKAAGFQICAEELGSIVEGHDVKKLKFHGGVDGIAGKLSTSTTTGLSGDSESRHRRQELFGVNKFTESEVRSFWIFVYEALQDMTLMILGVCAFVSLIVGIATEGWPKGAHDGLGIVASILLVVFVTAMSDYRQSLQFKDLDKEKKKISIQVTRNGYRQKMSIYSLLPGDLVHLSIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVTSQNPFLLSGTKVQDGSCTMLITTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLVFAVITFAVLVKGLMGRKLQEGRFWWWSADDALEMLEFFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNRMTVVKTCICMNIKEVTSNDSTLSSELPDSTLKMLLQSIFSNTGGEVVVNKKGKREILGTPTESALLEFGLSLGGDFHAERQTCKVVKVEPFNSERKRMGVVLEIPGGGLRAHSKGASEIILAACDKVINSNGDVVSIDEESSNYLNSTIDQFAGEALRTLCLAYLELENGFSTEDPIPVSGYTCVGIVGIKDPVRPGVKESVEVCRSAGIVVRMVTGDNINTAKAIARECGILTDDGIAIEGPDFREKTQEELFELIPKIQVMARSSPLDKHTLVKHLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALLVNFSSACMTGSAPLTAVQLLWVNMIMDTLGALALATEPPTDDLMKRMPVGRKGEFINNVMWRNILGQALYQFVVIWFLQSVGKWVFFLRGPNAEVVLNTLIFNTFVFCQVFNEVNSREMEDTDVFKGIWDNHVFIGVLGATVFFQILIVEYLGTFANTTPLSLVQWIFCLGAGYVGLPLAVRLKQIPV 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01486 1014 PRINTS P-type cation-transporting ATPase superfamily signature 284 298 - -
Gma17g01486 1014 PRINTS P-type cation-transporting ATPase superfamily signature 453 467 - -
Gma17g01486 1014 PRINTS P-type cation-transporting ATPase superfamily signature 650 661 - -
Gma17g01486 1014 PRINTS P-type cation-transporting ATPase superfamily signature 672 682 - -
Gma17g01486 1014 PRINTS P-type cation-transporting ATPase superfamily signature 753 772 - -
Gma17g01486 1014 PRINTS P-type cation-transporting ATPase superfamily signature 777 789 - -
Gma17g01486 1014 Pfam Cation transporter/ATPase, N-terminus 117 185 IPR004014 -
Gma17g01486 1014 Gene3D - 139 336 - -
Gma17g01486 1014 SFLD p-type atpase 435 805 IPR044492 -
Gma17g01486 1014 Gene3D - 450 798 IPR023214 -
Gma17g01486 1014 SFLD Haloacid Dehalogenase 435 805 - -
Gma17g01486 1014 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 110 1014 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Gma17g01486 1014 Pfam Cation transporting ATPase, C-terminus 838 1007 IPR006068 -
Gma17g01486 1014 PANTHER CATION TRANSPORTING ATPASE 2 1013 - -
Gma17g01486 1014 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 50 IPR024750 GO:0005516
Gma17g01486 1014 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 459 662 IPR023299 GO:0000166
Gma17g01486 1014 PANTHER CALCIUM-TRANSPORTING ATPASE 2 1013 - -
Gma17g01486 1014 ProSitePatterns E1-E2 ATPases phosphorylation site. 455 461 IPR018303 -
Gma17g01486 1014 Gene3D - 168 998 - -
Gma17g01486 1014 SUPERFAMILY HAD-like 451 858 IPR036412 -
Gma17g01486 1014 SUPERFAMILY Calcium ATPase, transduction domain A 239 333 IPR008250 -
Gma17g01486 1014 Pfam E1-E2 ATPase 237 431 - -
Gma17g01486 1014 Gene3D - 18 77 - -
Gma17g01486 1014 Pfam Cation transport ATPase (P-type) 513 591 - -
Gma17g01486 1014 Gene3D - 463 657 IPR023299 GO:0000166
Gma17g01486 1014 SUPERFAMILY Calcium ATPase, transmembrane domain M 117 1013 IPR023298 -
Gma17g01486 1014 PRINTS H+-transporting ATPase (proton pump) signature 609 627 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma17g01486 1014 PRINTS H+-transporting ATPase (proton pump) signature 753 769 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma17g01486 1014 PRINTS H+-transporting ATPase (proton pump) signature 785 810 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma17g01486 1014 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 386 475 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma17g01486 1014 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 724 837 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma17g01486 1014 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 547 698 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma17g01486 1014 CDD P-type_ATPase_Ca_PMCA-like 144 886 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01486 Gma-Chr17 14239442 14244122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01486 1 1014 Primary Pumps ATPases AT4G37640 80.690 0.0 1699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01486 K01537 - gmx:100815662 1978.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01486 17 14239442 14244122 Gma05g01062 05 30333187 30337707 GST
Gma01g01965 01 55130620 55135605 Gma17g01486 17 14239442 14244122 PCT
Gma11g00443 11 3652913 3660119 Gma17g01486 17 14239442 14244122 PCT
Gma17g01486 17 14239442 14244122 Gma01g01965 01 55130620 55135605 PCT
Gma17g01486 17 14239442 14244122 Gma11g00443 11 3652913 3660119 PCT