Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01482 ATGGATACCTTGTTTAGACTAGTAAGTTTTCATCAACAGCAACAACCACAACAACAACCTGATCCATCCCTCAACTCCACCACCAGCAGAACCTCCAGCAGCTCCAGATCCTCCAGACAAAACTACTACCCTTATTCCCATCAAGAAGAAGAAGAATGCTTCAACTTTTACATGGATGAAGAAGACTTATCCTCGTCTTCTTCCAAACACTACTACCACCCTTATCAACCCCATCATCATCAACAACACAACGTATCCAACATTTCTACAAACACCTTCAGCACCACCCCTAACACTGATTACTCCTACTCCTACTCCTTCTCTCCCACGCAACCTGTTCAAGACTTCAACTTCGAATTCTCCTCCCCCAACTGGTCCCACAACCTCCTCCTCGAATCCGCACGCGCCGTCGCCGACAACAACTCCACGCGCCTCCACCACCTCCTCTGGATGCTCAACGAGCTCAGCTCCCCCTACGGCGACACCGAACAAAAACTTGCTGCGTATTTCCTCCGAGCCTTGTTCAGCCGCGTCACCGAAGCTGGCGACCGAACCTACCGAAGCTTAGCTTCGGCGTCTGAGAAAACATGCTCATTTGAATCCACAAGAAAAACGGTCCTGAAATTCCAAGAAGTTAGCCCTTGGACTACCTTCGGACACGTGGCATCCAATGGCGCCATCTTGGAAGCCTTGGAGGGAAACTCCAAATTGCATATACTTGACATCAGCAACACTTATTGCACCCAGTGGCCAATGCTTCTGGAAGCATTGGCCACTCGGAGCGAAGAAACTCCACACCTATGTTTAACAACAATTGTTACTGGTTCTAGAATCGGTAACAACGTCCAGCGCGTGATGAAGGAAATCGGAACGCGAATGGAGAAATTCGCCAGACTCATGGGCGTTCCTTTTAAGTTCAACGTCGTTCATCACTACGGCGATCTATCCGAGTTCAATTTCTCAGAGCTTGATATCAAAGACGATGAGGCTTTGGCTGTGAATTGTGTGAACTCGCTGCATTCGGTTTCCGCGCTAGGAAACAACCGCGACGCGTTGATATCGGCGTTGCAAGCGTTGCAGCCGCGGATTGTGACGGTGGTGGAGGAGGAGGCTGATTTGGACGTTGGAATCGACGGTTACGAGTTCGTAAAAGGCTTTGAAGAAAGTTTGAGGTGGTTTAGGGTTTACTTTGAGGCTTTGGATGAGAGTTTTGTGAAGACGAGCAACGAGAGGCTGATGCTGGAGCGCGCGGCGGGGAGGGCGGTGGTGGACCTGGTGGCGTGCTCGCCGGCGGATTCCGTGGAGCGCCGCGAGACGGCGGCGCGGTGGGCGGCGAGGCTTCACAACGGAGGGCTAAACGCGGCGCCGTTTAGCGACGAAGTTTGCGACGACGTGAGGGCGCTGTTGAGGAGGTACAAGGAAGGGTGGTCGATGGCGGCGTGCTCCGACGCCGGAATATTCCTCTCGTGGAAGGACACGCCGGTGGTGTGGGCCAGTGCATGGAGGCCATAA 1512 0.5265 MDTLFRLVSFHQQQQPQQQPDPSLNSTTSRTSSSSRSSRQNYYPYSHQEEEECFNFYMDEEDLSSSSSKHYYHPYQPHHHQQHNVSNISTNTFSTTPNTDYSYSYSFSPTQPVQDFNFEFSSPNWSHNLLLESARAVADNNSTRLHHLLWMLNELSSPYGDTEQKLAAYFLRALFSRVTEAGDRTYRSLASASEKTCSFESTRKTVLKFQEVSPWTTFGHVASNGAILEALEGNSKLHILDISNTYCTQWPMLLEALATRSEETPHLCLTTIVTGSRIGNNVQRVMKEIGTRMEKFARLMGVPFKFNVVHHYGDLSEFNFSELDIKDDEALAVNCVNSLHSVSALGNNRDALISALQALQPRIVTVVEEEADLDVGIDGYEFVKGFEESLRWFRVYFEALDESFVKTSNERLMLERAAGRAVVDLVACSPADSVERRETAARWAARLHNGGLNAAPFSDEVCDDVRALLRRYKEGWSMAACSDAGIFLSWKDTPVVWASAWRP 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01482 503 PANTHER PROTEIN SHORT-ROOT 1 502 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Gma17g01482 503 Pfam GRAS domain family 128 502 IPR005202 -
Gma17g01482 503 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 502 IPR005202 -
Gma17g01482 503 MobiDBLite consensus disorder prediction 8 43 - -
Gma17g01482 503 ProSiteProfiles GRAS family profile. 117 502 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01482 Gma-Chr17 14199802 14201600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01482 1 503 GRAS Transcription Factor Family AT4G37650 57.303 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gma17g01482 GRAS 6.9e-102 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01482 - - gmx:100814082 970.304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01482 17 14199802 14201600 Gma05g01066 05 30441050 30442588 GST
Gma01g01971 01 55170589 55172019 Gma17g01482 17 14199802 14201600 PCT
Gma11g00437 11 3614064 3615512 Gma17g01482 17 14199802 14201600 PCT
Gma17g01482 17 14199802 14201600 Gma01g01971 01 55170589 55172019 PCT
Gma17g01482 17 14199802 14201600 Gma11g00437 11 3614064 3615512 PCT