Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01479 ATGGGTGCTCCTAAGCAGAAATGGACTGCGGAAGAAGAAGCGGCACTGAAAGCTGGTGTACTCAAGCATGGGGCAGGAAAATGGCGCACCATACTTACAGATCCTGAGTTCAGTGCCATTTTGCATATGCGTTCGAATGTAGATCTTAAGGATAAATGGAGGAATATAAACGTGACAGCGATATGGGGATCCCGGCAGAAGGCAAAGCTTGCTCTTAAAAGGAACCTGCCAGCCCCCAAAATTGACAATAACCATATGGCCTTGAGTACCGTAGTTCGACATGATGAAGTTCTTGATACTAAACCCTTGGCAGTTTCTGGTGGACCATTGCAATCTACCAATTTGAAAGAACAAATATCTAGGTTGGTGGATAATCATATATTAGAGGCAATTGTCTACATGAAGGAGCAAAAGGGTTCTGACAAGGCTGCCATTGCTTCTTTCATAGAGGAAAAATATCGGTTTCCACCAAATCTCAGTAAACTACTGCCAGCCAAACTGAAGCATATGGTGGCAAGTGGCAAAATAATCAAGGAAAAGCATAAGTACAGGATTGCGCCAAGTTCAACAGTCTCTGAGAAAAGAAGATGCTCTTCATTGGTACTTTTGGAAGACAGGCCCAAAGATCCTTCAGAAGCACATAAGAATGATGATGTCAACATCCTTTTAAAATCCCAAATTGATGCAGAGATATCAAAAGTGAAGGGCTTGACAGCTCAAGAGGCAGCTGCTGCGGCTGCAAAAGCAGTTGCGGAGGCAGAGACTGCAATTGCACAGGCTGAGGCAGCAGCTAGGGAGGCAGAGGCTGCAGAAGCTGAGGCTGAGGCTGCTCAAGTGTTTGCAAAAGCAGCAATGAAGGCGCTAAAATGCAAAATGCTTCATATTTGA 888 0.4471 MGAPKQKWTAEEEAALKAGVLKHGAGKWRTILTDPEFSAILHMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRNLPAPKIDNNHMALSTVVRHDEVLDTKPLAVSGGPLQSTNLKEQISRLVDNHILEAIVYMKEQKGSDKAAIASFIEEKYRFPPNLSKLLPAKLKHMVASGKIIKEKHKYRIAPSSTVSEKRRCSSLVLLEDRPKDPSEAHKNDDVNILLKSQIDAEISKVKGLTAQEAAAAAAKAVAEAETAIAQAEAAAREAEAAEAEAEAAQVFAKAAMKALKCKMLHI 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01479 295 Pfam linker histone H1 and H5 family 127 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gma17g01479 295 PANTHER MYB TRANSCRIPTION FACTOR 1 295 - -
Gma17g01479 295 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Gma17g01479 295 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gma17g01479 295 CDD SANT_TRF 6 57 - -
Gma17g01479 295 Gene3D - 2 59 - -
Gma17g01479 295 SUPERFAMILY "Winged helix" DNA-binding domain 124 196 IPR036390 -
Gma17g01479 295 PANTHER SINGLE MYB HISTONE 4 1 295 IPR044597 GO:0003691
Gma17g01479 295 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
Gma17g01479 295 SMART sant 4 59 IPR001005 -
Gma17g01479 295 Coils Coil 243 280 - -
Gma17g01479 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Gma17g01479 295 Gene3D - 122 196 IPR036388 -
Gma17g01479 295 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Gma17g01479 295 SMART h15plus2 104 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01479 Gma-Chr17 14163542 14173066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01479 1 292 Single Myb Histone (SMH) Gene Family AT5G67580 54.237 6.53e-76 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gma17g01479 Linker_histone 6.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01479 K09422 - gmx:778043 495.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01479 17 14163542 14173066 Gma05g01070 05 30560957 30564718 GST
Gma01g01975 01 55193175 55200400 Gma17g01479 17 14163542 14173066 PCT
Gma11g00433 11 3588156 3590739 Gma17g01479 17 14163542 14173066 PCT
Gma17g01479 17 14163542 14173066 Gma01g01975 01 55193175 55200400 PCT
Gma17g01479 17 14163542 14173066 Gma11g00433 11 3588156 3590739 PCT