Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01472 atgaggcagaaggcgagatcactgttaaaatggcttgatgctggttacaaaacctgccccaagacacagcagacacttgtgcatacaacccttacccctaactatgttttgaagagtttgattgctttgtggtgtgaaagcaacggtattgagctaccaaagaagcaagggaactgtagaacaaagaaatgtggtggcagcagtctttcagattgtgatcgaactgctattggtgctttattggataaactaacgagtaatgatatagaacagcaaaagGCAGCTGGTGGTGAGCTTCGGTTGCTGGGTAAAAGGAATGCAGACAACCGAGTATGCATTGCTGAGGTAGGAGCAATACCACCTCTTGTAGATCTATTGTCTTCTTCAGACCCTCAAACTCAGGAGCATGCTGTTACAGCGCTTCTCAATCTTTCCATCAACGAGAGTAATAAAGGAACTATAGTAAATGTTGGAGCCATACCGGATATTGTAGATGTACTGAAAAATGGCAACATGGAGGCTAGAGAAAATGCAGCTGCAACTCTCTTTAGTTTATCGGTTCTAGACGAGAACAAGGTGCAAATAGGTGCAGCTGGAGCTATCCctgctctaataaagttactttgtgaaggtactcctacaggtaagaaggatgttgctactgctatcttcaacctatctatttatcagggaaataaagcaaaagctgtaaaagctggtatagtagccccactgatacaatttctgaaggatgctgggggtggaatggtagatgaagcactagctattatggaaatccttgctagccaccatgaaggcagggtagcgatcg 832 0.1755 MRQKARSLLKWLDAGYKTCPKTQQTLVHTTLTPNYVLKSLIALWCESNGIELPKKQGNCRTKKCGGSSLSDCDRTAIGALLDKLTSNDIEQQKAAGGELRLLGKRNADNRVCIAEVGAIPPLVDLLSSSDPQTQEHAVTALLNLSINESNKGTIVNVGAIPDIVDVLKNGNMEARENAAATLFSLSVLDENKVQIGAAGAIPALIKLLCEGTPTGKKDVATAIFNLSIYQGNKAKAVKAGIVAPLIQFLKDAGGGMVDEALAIMEILASHHEGRVAI 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01472 277 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 159 IPR000225 GO:0005515
Gma17g01472 277 Gene3D - 63 277 IPR011989 -
Gma17g01472 277 ProSiteProfiles U-box domain profile. 1 51 IPR003613 GO:0004842|GO:0016567
Gma17g01472 277 SMART arm_5 229 269 IPR000225 GO:0005515
Gma17g01472 277 SMART arm_5 106 146 IPR000225 GO:0005515
Gma17g01472 277 SMART arm_5 147 187 IPR000225 GO:0005515
Gma17g01472 277 SMART arm_5 188 228 IPR000225 GO:0005515
Gma17g01472 277 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 8 277 - -
Gma17g01472 277 SUPERFAMILY ARM repeat 75 274 IPR016024 -
Gma17g01472 277 PANTHER U BOX DOMAIN-CONTAINING 8 277 - -
Gma17g01472 277 SUPERFAMILY RING/U-box 7 53 - -
Gma17g01472 277 SMART Ubox_2 4 44 IPR003613 GO:0004842|GO:0016567
Gma17g01472 277 Pfam Armadillo/beta-catenin-like repeat 106 145 IPR000225 GO:0005515
Gma17g01472 277 Pfam Armadillo/beta-catenin-like repeat 189 227 IPR000225 GO:0005515
Gma17g01472 277 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 51 IPR013083 -
Gma17g01472 277 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 158 200 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01472 Gma-Chr17 14048464 14049295 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01472 7 277 U-box Gene Family AT3G54850 76.015 4.58e-138 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01472 - - gmx:100798797 543.888