Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01448 ATGGGAAGAGCTCCTTGTTGTGACAAAGCTAATGTCAAGAGAGGTCCATGGTCACCTGAAGAAGACACCAAACTCAAATCTTATATTGAAGAGCATGGAACTGGTGGCAACTGGATAGCCTTGCCTCAGAAAATAGGCCTCAAGAGGTGTGGGAAAAGCTGTCGTCTCAGGTGGCTGAATTATCTTCGTCCAAACATCAAACACGGAGGTTTCTCAGAAGAAGAAGATAACATAATTTGCAGCCTCTATGTTACCATTGGAAGCAGGTGGTCTATTATAGCAGCACAATTACCAGGGCGCACTGATAATGACATAAAGAACTATTGGAACACTAAGCTGAAGAAGAAGCTACTAGGGAAGCAAAGGAAGGAGCAACAGGCTCAAGCTCGCAAAGTTTTTAACCAAAAGCAAGAGATCAAGAGAGAGAGTGAAGATTTGATGTTACCTGTTGGAGTTATTTTCAGAACTCCTTATTATTGGCCTGAACAACAACATTCATGGCACATTCCAGTGACAAATAATGCTTCCATTCAATACTCCAATCTCAACTACAACAATCAAACATCATCATTCATCAAACACTTCCCTAGCAACAACATAGTCACTGCCACCACCATGAATTCACAACACTCATCACGTGACATTTCCTTAATACAAAACCAGTTACATGATTTACATCCTTCCACAGTGAGCATGGTAACCACGGACACGTGTCACACATCAAACGTGCTTCAAGGGTTTGGGAATTTTTCCATGGCCAGTGACTTGGCCTGTGTGAATCAGCAGCAACAAATAGATGGGTCAATGCGGGTTTTTTATGGATTGGAAACCATGGACGTGGCAACAAATGGTAGCACAAACACTAGTACTTCAACAGAAAGCATTAGTTGGGGAGACATAAGCTCTTTGGTTTACTCGCCTTTGTTGGTTTCTGACTACGAAGCTTGTCAACAAAGATTATTAATGCCTCAAGATGTTACTTTCGAGGAGTCTAGTTACTTTGCAATGCAAACGCAATAA 1020 0.4176 MGRAPCCDKANVKRGPWSPEEDTKLKSYIEEHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVTIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLGKQRKEQQAQARKVFNQKQEIKRESEDLMLPVGVIFRTPYYWPEQQHSWHIPVTNNASIQYSNLNYNNQTSSFIKHFPSNNIVTATTMNSQHSSRDISLIQNQLHDLHPSTVSMVTTDTCHTSNVLQGFGNFSMASDLACVNQQQQIDGSMRVFYGLETMDVATNGSTNTSTSTESISWGDISSLVYSPLLVSDYEACQQRLLMPQDVTFEESSYFAMQTQ 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01448 339 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Gma17g01448 339 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Gma17g01448 339 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Gma17g01448 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Gma17g01448 339 Coils Coil 122 142 - -
Gma17g01448 339 PANTHER OS09G0431300 PROTEIN 1 320 - -
Gma17g01448 339 SMART sant 67 115 IPR001005 -
Gma17g01448 339 SMART sant 13 64 IPR001005 -
Gma17g01448 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Gma17g01448 339 CDD SANT 16 62 IPR001005 -
Gma17g01448 339 CDD SANT 71 111 IPR001005 -
Gma17g01448 339 Gene3D - 7 68 - -
Gma17g01448 339 Gene3D - 70 145 - -
Gma17g01448 339 PANTHER TRANSCRIPTION FACTOR RAX3-LIKE 1 320 - -
Gma17g01448 339 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gma17g01448 339 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01448 Gma-Chr17 13761490 13763224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01448 1 306 MYB Transcription Factor Family AT3G49690 50.774 4.05e-95 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma17g01448 Myb_DNA-binding 7.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01448 K09422 - gmx:100791406 675.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01448 17 13761490 13763224 Gma05g01104 05 31408260 31409794 GST
Gma01g01992 01 55373493 55374670 Gma17g01448 17 13761490 13763224 PCT
Gma11g00414 11 3405220 3407155 Gma17g01448 17 13761490 13763224 PCT
Gma17g01448 17 13761490 13763224 Gma01g01992 01 55373493 55374670 PCT
Gma17g01448 17 13761490 13763224 Gma11g00414 11 3405220 3407155 PCT