Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01444 ATGATGGGTCTTGATCAAGATGCTAGCAGCAACTCTGGCCTTCATCTTATTCTAGGGTTAGCTTTGACTGCCACCACCACCACTACTCCATCACTACCATCCATTTCCAACAAGCTTGATCATGTTGATCATCATCACCATCTTATAACTCTTAGACCAACAACAAAGTCACCCTATAATTCCTCTGAGGCTGAACCATCATTAACGTTGGGCTTGTCCCGTGAGAGTTACCTCAAAGTACCCAAAAACATCATAGGACAAAACAGCAACAACAAAGTCTCGTCTTGTGATGACCCTCTTGATCACTTGTCCACACAGACTAATTCACCTCATCACAGTGCTGTTTCCTCCTTCTCCAGTGGCAGGGTCAAGAGGGAGAGGGATCTCAGTTGCGAAGAAGTTGTGGATGCAACAGAGATTGATCAGAGGGACCATAGCTGTGAAGGAATAGTAAGAGCCACTGACGAAGACGAAGACGGCACCGCCGCCAGAAAGAAACTTAGGCTTAGTAAAGAACAATCTGCTTTGCTAGAAGAAAGCTTCAAACAACATAGCACCCTCAATCCTAAACAGAAGCAAGCTTTGGCGAAGCAGTTGAATCTTAGGCCACGACAAGTTGAGGTGTGGTTCCAGAACAGGAGAGCCAGAACAAAGCTGAAGCAGACAGAGGTGGACTGCGAGTTCCTAAAGAAATGTTGTGAGACATTAACAGACGAAAACAGACGGTTACAGAAGGAGCTTCAAGAGCTTAAAGCACTGAAACTGGCTCAGCCTCTGTACATGCCTATGCCTGCGGCAACACTCACCATGTGCCCCTCTTGTGAGAGGCTCGGCGGCGGCATCAACGGTGGCGGCGGCGGTTCCCCTAAGACACCATTCTCCATGGCTCCTAAGCCTCACTTCTTCAACCCCTTCGCCAACCCTTCTGCAGCATGTTGA 939 0.4814 MMGLDQDASSNSGLHLILGLALTATTTTTPSLPSISNKLDHVDHHHHLITLRPTTKSPYNSSEAEPSLTLGLSRESYLKVPKNIIGQNSNNKVSSCDDPLDHLSTQTNSPHHSAVSSFSSGRVKRERDLSCEEVVDATEIDQRDHSCEGIVRATDEDEDGTAARKKLRLSKEQSALLEESFKQHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLAQPLYMPMPAATLTMCPSCERLGGGINGGGGGSPKTPFSMAPKPHFFNPFANPSAAC 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01444 312 Coils Coil 226 256 - -
Gma17g01444 312 Gene3D - 168 218 - -
Gma17g01444 312 SMART halz 220 263 IPR003106 GO:0006355|GO:0043565
Gma17g01444 312 SMART HOX_1 162 224 IPR001356 GO:0003677
Gma17g01444 312 PANTHER - 38 312 - -
Gma17g01444 312 MobiDBLite consensus disorder prediction 88 122 - -
Gma17g01444 312 ProSiteProfiles 'Homeobox' domain profile. 160 220 IPR001356 GO:0003677
Gma17g01444 312 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 38 312 - -
Gma17g01444 312 MobiDBLite consensus disorder prediction 88 120 - -
Gma17g01444 312 CDD homeodomain 164 221 IPR001356 GO:0003677
Gma17g01444 312 Pfam Homeobox associated leucine zipper 220 254 IPR003106 GO:0006355|GO:0043565
Gma17g01444 312 ProSitePatterns 'Homeobox' domain signature. 195 218 IPR017970 GO:0000981|GO:0006355
Gma17g01444 312 SUPERFAMILY Homeodomain-like 158 221 IPR009057 -
Gma17g01444 312 Pfam Homeodomain 164 218 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01444 Gma-Chr17 13709210 13711060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01444 2 312 Homeobox Transcription Factor Family AT4G37790 55.486 3.79e-91 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma17g01444 Homeodomain 2.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01444 K09338 - gmx:100807123 561.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01444 17 13709210 13711060 Gma05g01109 05 31521554 31523228 GST
Gma01g01998 01 55406161 55408007 Gma17g01444 17 13709210 13711060 PCT
Gma11g00411 11 3372807 3374603 Gma17g01444 17 13709210 13711060 PCT
Gma17g01444 17 13709210 13711060 Gma01g01998 01 55406161 55408007 PCT
Gma17g01444 17 13709210 13711060 Gma11g00411 11 3372807 3374603 PCT