Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01442 ATGAGCTCCATCACTATAGACTTCTCGCTGCTCCACCTCTCACCGCCCCACTCCTGCTGCCACATATCCTTCCTCATTTCCTGTGATTCCTCCCGCCGCAAATCTAGCTTTGGCGACTTTCACAGTAACAACAACAGCGATTATCTCGAAGCTTCTCTCCTGCTATCAGAGGTTACTTTGAAGTTCATTAGTGCTGGTAAACAGTTTCACCAATACCAAGTGGTTGGGAGAGCTCTTCCCACGCAACCAGATCAGCACCCCAAGATCTATCAAATGAAGCTTTGGTCCACCAATGAGGTTTTCGCCAAGTCCAAGTTCTGGTATTTTTTGAGGAAATTGAAAAAGGTGAAGAAGAGAAACAACCAAGTGCTTGCTATCAACGAGGTAAAATATCATTTTTTGAACACCTTTTGTAATAAGGTTGGAAATGTCTTGAGGCAGAGTGTTGCTCGTAGCACAAAAGCACCTGTTTTATCCATGTATAATTACATTCGTTGCATGTCTTCAAGCAAGCTTTTCATTGGAGGCCTTTCATATGGAGTTGATGATTAA 552 0.4312 MSSITIDFSLLHLSPPHSCCHISFLISCDSSRRKSSFGDFHSNNNSDYLEASLLLSEVTLKFISAGKQFHQYQVVGRALPTQPDQHPKIYQMKLWSTNEVFAKSKFWYFLRKLKKVKKRNNQVLAINEVKYHFLNTFCNKVGNVLRQSVARSTKAPVLSMYNYIRCMSSSKLFIGGLSYGVDD 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01442 183 PANTHER 60S RIBOSOMAL PROTEIN L18A 61 129 IPR028877 -
Gma17g01442 183 Gene3D - 62 132 - -
Gma17g01442 183 Hamap 50S ribosomal protein L18Ae [rpl18a]. 69 132 IPR028877 -
Gma17g01442 183 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 70 151 IPR023573 GO:0003735|GO:0005840|GO:0006412
Gma17g01442 183 PANTHER 60S RIBOSOMAL PROTEIN L18A 61 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01442 Gma-Chr17 13692802 13698126 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01442 65 129 Cytoplasmic Ribosomal Protein Gene Family AT3G14600 76.923 1.54e-31 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01442 K02882 - gmx:100800228 145.591