Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01430 ATGATGCAAATTTCGTCAAACATGTACATGCCTGAATTTGGAATGGAGGACCCCACTTTGTTTCATCAATACCCTATGGATTCTTCATCAGCATTATTCCAGCTCGAAGATCTTGACTTTGAGTCCTTCTCCGCATCCCCAAAGAACTCTTCCTCTCACAATAAGCGATTATTCAACTCAGAAAGCACACAAAACTCTTTCCACAAAAGTCCTCATGAACAATATTCTGTTGCCCCACCAAGACCAACCAAGCAAAATAAGACTGTGATGAGCACTACTTGGAGTGCTTACAACGCTCATCACCATCATCATGACATGGTGGCTCCGAAAGCTTCTTCTTCTTCGTCCTCCAAAATCATCTCTTTTGATCAGCACTCCAATGCATCTTCTGTTACTTCCCAACAACTCTACAACAACGTGGATGCTGCTGCCAAAGTGAAGAAGCCTAAGATTGAAACTGGGTATGGTGAAAACTTGGATTTTTCAGCAGCTGCTGCGGCTGCTTCTCAAAGTATCTGTGACAACAACAGTTTTCTAGATCACTATGATAATCAAGATAAAAAGGCTGCGGCTTCAACGACTAGAAACCCTACCCAAGCTCAAGATCATGTGATAGCCGAAAGAAAACGAAGGGAAAAGCTAAGTCAGAGGTTCATTGCTCTTTCTGCCATAGTTCCTGGACTCAAGAAGATGGACAAGGCTACCGTATTGGAAGATGCTATAAAGTACGTGAAACAACTGCAAGAAAGGGTAAAGACTCTGGAGGAACAAGCTGTGGATAAAACAGTTGAATCAGCAGTTTTTGTGAAGAGATCTGTTGTGTTTGCCGGCGTTGATAGCTCCTCCTCCGACGAAAACTCCGACCAATCGCTCCCCGAAATGGAAGCAAGAATTTCTGGTAAAGAGGTACTAATCAGAATTCACTGCGACAAAAACAGTGGAGGAGCTGCTGCTATACTAAGGGAATTAGAGAAGCATTATCTCACAGTTCAGAGTAGCAGCTTCTTGCCCTTTGGGAATAACACACTTGACATAACTATTGTTGCTAAGATGAACAACGACTATTGCTTGACAGCAAAGGATCTCATAAGAAGCTTAAGTCAGTGTTTGAGGCAGCTTTGA 1122 0.4278 MMQISSNMYMPEFGMEDPTLFHQYPMDSSSALFQLEDLDFESFSASPKNSSSHNKRLFNSESTQNSFHKSPHEQYSVAPPRPTKQNKTVMSTTWSAYNAHHHHHDMVAPKASSSSSSKIISFDQHSNASSVTSQQLYNNVDAAAKVKKPKIETGYGENLDFSAAAAAASQSICDNNSFLDHYDNQDKKAAASTTRNPTQAQDHVIAERKRREKLSQRFIALSAIVPGLKKMDKATVLEDAIKYVKQLQERVKTLEEQAVDKTVESAVFVKRSVVFAGVDSSSSDENSDQSLPEMEARISGKEVLIRIHCDKNSGGAAAILRELEKHYLTVQSSSFLPFGNNTLDITIVAKMNNDYCLTAKDLIRSLSQCLRQL 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01430 373 MobiDBLite consensus disorder prediction 43 72 - -
Gma17g01430 373 MobiDBLite consensus disorder prediction 43 88 - -
Gma17g01430 373 PANTHER BHLH TRANSCRIPTION FACTOR 1 372 - -
Gma17g01430 373 Pfam Helix-loop-helix DNA-binding domain 201 248 IPR011598 GO:0046983
Gma17g01430 373 Coils Coil 237 264 - -
Gma17g01430 373 CDD bHLH_AtNAI1_like 200 272 - -
Gma17g01430 373 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 1 372 - -
Gma17g01430 373 Gene3D - 189 262 IPR036638 GO:0046983
Gma17g01430 373 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 202 258 IPR036638 GO:0046983
Gma17g01430 373 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 198 247 IPR011598 GO:0046983
Gma17g01430 373 SMART finulus 204 253 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01430 Gma-Chr17 13503017 13506350 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01430 180 370 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 50.510 2.48e-57 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma17g01430 HLH 9.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01430 - - gmx:100785572 722.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01430 17 13503017 13506350 Gma05g01118 05 31772416 31776668 GST
Gma01g02010 01 55511428 55517186 Gma17g01430 17 13503017 13506350 PCT
Gma11g00399 11 3276624 3279067 Gma17g01430 17 13503017 13506350 PCT
Gma17g01430 17 13503017 13506350 Gma01g02010 01 55511428 55517186 PCT
Gma17g01430 17 13503017 13506350 Gma11g00399 11 3276624 3279067 PCT