Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01429 ATGACATCAATGGAGGAATCATGGACTAGTTGGCTATGTGACATGGAACCAGATGATTACAGTTTCATGGGTCAATCGGACATAAAAGTGGATGATGTGAATGGAACTTTAGCATCTCCTCATGATGTAGCCACTGCATTATTAGAGAAGAATCAGCAAAGCTCATTTTCCACAGTAGAGAGTCTCTCTTCAGCGGCTGAGAGTGGCTTGGAGAGGCCTTTCAAGTTACCAAAGATAGAACAACTCTCACAAAAGACAGCTTCCAGTTCCACTCCCTCCTCCTATATTCTCTCCTTTGACAACACAAATCCACCACCGGTTACGGTTGAATCAGCCTCAAAGCCAGGAACCAAGGTTTTGAATCTTGAGAAAGTTTTGCCTTCAAAGAATGAACCAAGACGAGTAGTTACTCAGCAGAACAAGAAAATGGGGTCATTTGCCGGATCTTCTCATCACACACAAGATCACATCATTGCTGAGAGAATGAGGAGAGAAAAAATTAGCCAGAAGTTGATTGCCCTCTCTGCCCTTATTCCAGACCTCAAAAAGATGGACAAGGTGTCCGTGTTGGGGGAGGCTATAAGGTATgtgaagcagctgaaggagcaagtgaaggtgctggaggagcaGAGCAAAAGGAAAAACGAGGAATCAGTGGTGTTTGCGAAGAAATCTCAGGTTTTTCCTGCGGACGAGGATGTCTCAGACACTTCATCAAACTCCTGCGAGTTCGGAAACTCCGATGATATCTCCACGAAAGCGACTTTGTCACTGCCAGAAGTTGAGGCGAGGGTGTCAAAGAAGAGCGTGCTGATTCGAATCCTCTGCGAGAAGGAAAAGGCAGTGCTGGTGAACATATTCAGAGAGATAGAGAAACTTCATCTCTCCGTCGTCAATAGCAGCGCCTTGTCTTTCGGTTCCTCTGTTCTCGACACAACCATCGTAGCCGAGATGGAGGATGAATTCAACATGGGCGTAAAGGAACTGGCCAGAAACCTTAGAGTAGGACTGATGCAATTTATGTAA 1026 0.4337 MTSMEESWTSWLCDMEPDDYSFMGQSDIKVDDVNGTLASPHDVATALLEKNQQSSFSTVESLSSAAESGLERPFKLPKIEQLSQKTASSSTPSSYILSFDNTNPPPVTVESASKPGTKVLNLEKVLPSKNEPRRVVTQQNKKMGSFAGSSHHTQDHIIAERMRREKISQKLIALSALIPDLKKMDKVSVLGEAIRYVKQLKEQVKVLEEQSKRKNEESVVFAKKSQVFPADEDVSDTSSNSCEFGNSDDISTKATLSLPEVEARVSKKSVLIRILCEKEKAVLVNIFREIEKLHLSVVNSSALSFGSSVLDTTIVAEMEDEFNMGVKELARNLRVGLMQFM 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01429 341 Pfam Helix-loop-helix DNA-binding domain 155 201 IPR011598 GO:0046983
Gma17g01429 341 Gene3D - 150 221 IPR036638 GO:0046983
Gma17g01429 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 200 IPR011598 GO:0046983
Gma17g01429 341 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 4 341 - -
Gma17g01429 341 PANTHER BHLH TRANSCRIPTION FACTOR 4 341 - -
Gma17g01429 341 SMART finulus 157 206 IPR011598 GO:0046983
Gma17g01429 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 217 IPR036638 GO:0046983
Gma17g01429 341 Coils Coil 190 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01429 Gma-Chr17 13481040 13483540 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01429 141 341 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 48.756 1.18e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma17g01429 HLH 2.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01429 - - gmx:100803386 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01429 17 13481040 13483540 Gma05g01121 05 31832034 31834228 GST
Gma01g02012 01 55530567 55533434 Gma17g01429 17 13481040 13483540 PCT
Gma11g00398 11 3262373 3264934 Gma17g01429 17 13481040 13483540 PCT
Gma17g01429 17 13481040 13483540 Gma01g02012 01 55530567 55533434 PCT
Gma17g01429 17 13481040 13483540 Gma11g00398 11 3262373 3264934 PCT