Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01428 ATGATGGAGGAATTGAACAAACCAATGGACGGATCAGCAACCAGCTGGTTATCCGATTTGGAAATGGATGATTACAATTTATTTCCAGATGAATGTCCCTTGAACTTGAACATGTTTGATGACCGAGAGTTTCTCTCACAAGACATTGCTAGTGCCTTCCAAGAACAGACACAGACCTTGCAACAGCAATCTTTGTCTTCAGAGTGCCCTTCCAAAACTGTGAGCAACTCATCCACCGATGAAACCACCTTTGACTTTGAGAGACCATCCAAGTTGCTGAAAACGACAACAAGCACTAGTTCTAACTTTGACTCATCCACCATCACCAAAACCCTTTCCCCCAAACTTTCCCCATCATCTTCCTTTCAATCTCAGATTCTCTCTTTTGACAACACCAACACCCAGTTTTATGAGTTTCACTGTACCTTAAACCCAACACAGAACGAGATGGTATCGGTGTCAGTGCCCCAAAAGGGAAAACCACGGTTCCCAACTCAAACCCCAAAAGGGTCACCGAAATATCAAAACTTTGAAACAAAAACCTCTCATGCTAAGAGGTCTCCTGCTCATGCTCAAGATCACATCATGGCTGAGAGAAAGCGAAGAGAGAAACTCAGCCAGAGCTTCATTGCTCTTGCAGCCCTTGTTCCTGGCCTAAAGAAGATGGACAAGGCTTCTGTGTTAGGGGACGCTATCGAATATGTGAAAGAGCTTAAAGAGCGGTTGACAGTTCTTGAAGAGCAGAGCAAGAAAACAAGGGCAGAATCGATAGTGGTTCTGAACAAGCCAGACCTCTCTGGTGATAATGATTCTTCTTCATGTGACGAGAGCATTGATGCTGATAGTGTCAGTGACTCACTGTTTGAAGTGGAATCAAGAGTATCAGGGAAGGAGATGCTGCTCAAGATCCACTGCCAGAAGCAAAGGGGACTTTTGGTCAAGTTACTGGCTGAGATTCAAAGTAATCACTTATTTGTTGCTAATAGCAGTGTCCTACCCTTTGGTAATTCTATCCTTGACATTACCATTGTTGCTCAGATGGGAGAAAGTTACAATTTGACCACTAAGGAACTTGCCAAGAATCTACGCGTGGCTGCATTGAAGATATTGTCATAA 1116 0.4364 MMEELNKPMDGSATSWLSDLEMDDYNLFPDECPLNLNMFDDREFLSQDIASAFQEQTQTLQQQSLSSECPSKTVSNSSTDETTFDFERPSKLLKTTTSTSSNFDSSTITKTLSPKLSPSSSFQSQILSFDNTNTQFYEFHCTLNPTQNEMVSVSVPQKGKPRFPTQTPKGSPKYQNFETKTSHAKRSPAHAQDHIMAERKRREKLSQSFIALAALVPGLKKMDKASVLGDAIEYVKELKERLTVLEEQSKKTRAESIVVLNKPDLSGDNDSSSCDESIDADSVSDSLFEVESRVSGKEMLLKIHCQKQRGLLVKLLAEIQSNHLFVANSSVLPFGNSILDITIVAQMGESYNLTTKELAKNLRVAALKILS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01428 371 Gene3D - 179 255 IPR036638 GO:0046983
Gma17g01428 371 SMART finulus 195 244 IPR011598 GO:0046983
Gma17g01428 371 CDD bHLH_AtNAI1_like 190 262 - -
Gma17g01428 371 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 194 255 IPR036638 GO:0046983
Gma17g01428 371 Pfam Helix-loop-helix DNA-binding domain 193 238 IPR011598 GO:0046983
Gma17g01428 371 MobiDBLite consensus disorder prediction 159 192 - -
Gma17g01428 371 MobiDBLite consensus disorder prediction 62 85 - -
Gma17g01428 371 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 189 238 IPR011598 GO:0046983
Gma17g01428 371 PANTHER BHLH TRANSCRIPTION FACTOR 5 371 - -
Gma17g01428 371 Coils Coil 228 255 - -
Gma17g01428 371 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 5 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01428 Gma-Chr17 13464047 13466464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01428 88 365 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.069 2.19e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma17g01428 HLH 1.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01428 - - gmx:100802862 671.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01428 17 13464047 13466464 Gma05g01122 05 31966580 31969038 GST