Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01424 ATGTGGAATCCAAGGGACCATGAAGATCAAGATGAGTCCTGGGAGGTCAGAGCCTTCGCAGAAGACACAAGTAACATGATGGGCACCACCTGGCCTCCTAGATTCTACTACTGCAGCTTCTGTAGAAGGGAGTTCCGTTCAGCACAAGCCCTTGGCGGCCACATGAACGTTCACCGCCGCGACCGCGCTCGCCTCCACCAAGCTTCAGTAGTACCCCACAACAACAACAATAGCAATAATAGCAACATCAACCCCATCTCCTCTTTTTCTAACACACCCTCTTTTCTCAACATCTCTCATCATCATCAGGACCCTTTTGTTGCAAATGGGGGCTTGTGCCTGTTGTACCCCTTTCCAAGCCCTAATAACAACAACAATGATCCATTTTCCTCTCTTGCCCACAACAATAATGCATGCGGTGACTTACCTTCCACTGTTTTTTCAGTTTCTTCTTCTCATTCCCAATATTCATCCCTTCAGTACTCTCCAATTAGGGTGCCTAGTTGCTCAGCTACTTCCTTTGATTTCTCGGTGGCTCAACCTGCTGCTGCTTCAGGGAGGAATAATGCTTTCTCTTCTTCTTATTCTGGGAAAGTGGAACAAGAACCCATAATCTCCTCTTCCACACATCATGGCCTCCACCATGAGGAGCTTGATCTAGAGCTCCGCTTGGGAAATAAATCAACATCAACCTGA 696 0.4741 MWNPRDHEDQDESWEVRAFAEDTSNMMGTTWPPRFYYCSFCRREFRSAQALGGHMNVHRRDRARLHQASVVPHNNNNSNNSNINPISSFSNTPSFLNISHHHQDPFVANGGLCLLYPFPSPNNNNNDPFSSLAHNNNACGDLPSTVFSVSSSHSQYSSLQYSPIRVPSCSATSFDFSVAQPAAASGRNNAFSSSYSGKVEQEPIISSSTHHGLHHEELDLELRLGNKSTST 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01424 231 Pfam C2H2-type zinc finger 36 60 - -
Gma17g01424 231 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
Gma17g01424 231 PANTHER OS07G0101800 PROTEIN 6 227 - -
Gma17g01424 231 PANTHER OS07G0101800 PROTEIN 6 227 - -
Gma17g01424 231 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Gma17g01424 231 SUPERFAMILY beta-beta-alpha zinc fingers 33 63 IPR036236 -
Gma17g01424 231 MobiDBLite consensus disorder prediction 207 231 - -
Gma17g01424 231 Gene3D Classic Zinc Finger 23 87 - -
Gma17g01424 231 MobiDBLite consensus disorder prediction 209 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01424 Gma-Chr17 13411372 13412067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01424 1 71 C2H2 Transcription Factor Family AT4G17810 71.429 1.92e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma17g01424 zf-C2H2_6 1.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01424 - - gmx:102660795 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01424 17 13411372 13412067 Gma17g01424 17 13411372 13412067 ECH
Gma17g01424 17 13411372 13412067 Gma05g01125 05 32105562 32106236 GST
Gma01g02016 01 55574414 55575166 Gma17g01424 17 13411372 13412067 PCT
Gma11g00394 11 3219692 3220474 Gma17g01424 17 13411372 13412067 PCT
Gma17g01424 17 13411372 13412067 Gma01g02016 01 55574414 55575166 PCT
Gma17g01424 17 13411372 13412067 Gma11g00394 11 3219692 3220474 PCT