Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01422 ATGGCTGCATTACCAGACTTGCACTTGCAACAAAATTTCCAGCAGCACCAGGACCAGCAGCACCAGCGTGATTTGGAGGAGCAGAAAACTCCTCCGAATCACAGAATGGGGGCGCCGTTCGACGATGATAGCGATGATAGAAGCCAGGGCCTGGAGCTCACTTCAGGTCCTGGCGACATCGTCGGACGGCGCCCGCGTGGCAGGCCTCCTGGGTCGAAGAACAAGCCTAAGCCGCCCGTCATAATCACCCGGGAGAGCGCCAACACGCTGAGGGCGCACATCCTCGAGGTCGGAAGCGGCTCCGACGTCTTCGACTGTGTCACCGCGTATGCCCGGCGGCGCCAGCGTGGGATCTGCGTCCTCAGTGGCAGCGGCACCGTCACCAATGTCAGTCTCCGGCAGCCTGCAGCTGCCGGTGCCGTCGTCACGCTGCACGGCAGGTTCGAGATTCTCTCCCTCTCTGGCTCGTTCCTCCCGCCGCCGGCTCCGCCGGGAGCCACCAGCCTCACAATCTACCTGGCCGGCGGGCAGGGGCAGGTTGTCGGAGGAAACGTCATCGGAGAATTAACCGCAGCAGGGCCAGTAATCGTCATCGCAGCGTCGTTCACCAACGTGGCTTACGAGAGGTTACCCTTAGAAGAAGATGAACAACAGCAGCAACAACAGCAGCTTCAGATTCAGCCACCTGCAACGACGTCGTCTCAAGGAAACAACAACAACAATAACCCTTTCCCCGACCCTTCTTCAGGACTTCCCTTCTTCAATTTACCACTCAATATGCAGAATGTTCAGTTACCAGTTGAGGGTTGGGCTGTAAACCCTGCTTCACGTCCACAACCTTTTTGA 846 0.5839 MAALPDLHLQQNFQQHQDQQHQRDLEEQKTPPNHRMGAPFDDDSDDRSQGLELTSGPGDIVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGSGSDVFDCVTAYARRRQRGICVLSGSGTVTNVSLRQPAAAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLTIYLAGGQGQVVGGNVIGELTAAGPVIVIAASFTNVAYERLPLEEDEQQQQQQQLQIQPPATTSSQGNNNNNNPFPDPSSGLPFFNLPLNMQNVQLPVEGWAVNPASRPQPF 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01422 281 MobiDBLite consensus disorder prediction 213 255 - -
Gma17g01422 281 MobiDBLite consensus disorder prediction 216 255 - -
Gma17g01422 281 PIRSF ESCAROLA 4 279 IPR014476 GO:0003680
Gma17g01422 281 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 15 278 IPR014476 GO:0003680
Gma17g01422 281 MobiDBLite consensus disorder prediction 19 49 - -
Gma17g01422 281 ProSiteProfiles PPC domain profile profile. 87 223 IPR005175 -
Gma17g01422 281 MobiDBLite consensus disorder prediction 1 80 - -
Gma17g01422 281 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 23 15 278 - -
Gma17g01422 281 SUPERFAMILY AF0104/ALDC/Ptd012-like 87 218 - -
Gma17g01422 281 CDD DUF296 91 202 IPR005175 -
Gma17g01422 281 Pfam Plants and Prokaryotes Conserved (PCC) domain 91 204 IPR005175 -
Gma17g01422 281 Gene3D - 90 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01422 Gma-Chr17 13365245 13366576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01422 61 275 AT-hook Motif Nuclear Localized (AHL) Family AT2G35270 70.698 1.45e-91 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01422 - - pvu:PHAVU_003G230600g 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01422 17 13365245 13366576 Gma17g01422 17 13365245 13366576 ECH
Gma17g01422 17 13365245 13366576 Gma05g01126 05 32193681 32197663 GST
Gma01g02017 01 55593451 55594203 Gma17g01422 17 13365245 13366576 PCT
Gma11g00393 11 3199363 3200610 Gma17g01422 17 13365245 13366576 PCT
Gma17g01422 17 13365245 13366576 Gma01g02017 01 55593451 55594203 PCT
Gma17g01422 17 13365245 13366576 Gma11g00393 11 3199363 3200610 PCT