Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01420 ATGGACGTACGCGAGACGCCCCGCCCACCGCCGCCCACCATGATGGTGGGCCCTACATCCTACGGTTCCACCAACCTCGGCCCTAATTTCTCCTCCTCCTCCGCCGCCGCCATGCTGGCCCCCGCCACCGCGCGATTCCCCTTTGGCGCCGTTCCTCCGCCGCAACAGCATCAGCCTCCGCCCTCGTCGGAGCCCTTCCCCGCCTCCGCCGCATATGACGGCTCCTCCTCGCCGATGAAGCCCTGCTCCCTCGCCAAGAAGAAGCGCGGGCGGCCCCGCAAATACTCGCCGGACGGTAGCATTGCCCTCGGCCTCGCTCCCACCCATACCTCGCCGCCCGCCTCCGCAGCCGCCGGAGGCGGAAGCGCCGGCGATTCGGCCGGCACAGCGTCTGCCGATGCTCCGGCGAAGAAGCACCGCGGAAGGCCGCCCGGGTCTGGGAAGAAACAGCTTGATGCCCTCGGTAGTGCTGGTGGGGTTGGATTCACTCCCCACGTGATCATGGTGGAGTCTGGCGAGGACATCACAGCAAAAATAATGGCCTTTTCTCAGCAAGGGCCTCGGACAGTTTGTATTCTTTCTGCTATTGGTGCAATCGGTAATGTTACCCTTCGACAGCCTGCAATGTCTGGTGGTATTGCTACCTACGAGGGCCGCTTTGAGATTATATCTTTATCAGGTTCTTTGCAGCAATCTGAAAATAACGGTGATCGTAGCAGAACATGCACTTTGAATGTAACTCTTGCAGGGTCTGATGGACGTGTTTTGGGTGGTGGAGTCGCTGGAACGCTAACTGCAGCATCAACTGTACAGGTCATTGTGGGTAGCTTTATTGCGTTTGCGAAAAAGTCGAGCTCGAGTGCCCTGAAATCTGGGTCTTCTTCTGCACCACCACCCCAAATGCTAACCTTTGGTGCACCCATGACCCCAAATAGTCCTACCTCTCAAGGGCCTTCAACTGAATCCTCTGAGGAACAGGATCATAGTCCATTTTGTAGGGGGCCAGGGCCTGGACATGGACTCTATAATAATGCTAGCCAGCCCGTTCATAATATGCCCATGTACCATCATCCACTATGGGCTGGCCAATCTCATCAGTGA 1101 0.5777 MDVRETPRPPPPTMMVGPTSYGSTNLGPNFSSSSAAAMLAPATARFPFGAVPPPQQHQPPPSSEPFPASAAYDGSSSPMKPCSLAKKKRGRPRKYSPDGSIALGLAPTHTSPPASAAAGGGSAGDSAGTASADAPAKKHRGRPPGSGKKQLDALGSAGGVGFTPHVIMVESGEDITAKIMAFSQQGPRTVCILSAIGAIGNVTLRQPAMSGGIATYEGRFEIISLSGSLQQSENNGDRSRTCTLNVTLAGSDGRVLGGGVAGTLTAASTVQVIVGSFIAFAKKSSSSALKSGSSSAPPPQMLTFGAPMTPNSPTSQGPSTESSEEQDHSPFCRGPGPGHGLYNNASQPVHNMPMYHHPLWAGQSHQ 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01420 366 ProSiteProfiles PPC domain profile profile. 158 299 IPR005175 -
Gma17g01420 366 Pfam Plants and Prokaryotes Conserved (PCC) domain 164 277 IPR005175 -
Gma17g01420 366 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Gma17g01420 366 SMART AT_hook_2 137 149 IPR017956 GO:0003677
Gma17g01420 366 MobiDBLite consensus disorder prediction 46 155 - -
Gma17g01420 366 MobiDBLite consensus disorder prediction 1 16 - -
Gma17g01420 366 MobiDBLite consensus disorder prediction 17 32 - -
Gma17g01420 366 MobiDBLite consensus disorder prediction 288 347 - -
Gma17g01420 366 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 58 329 IPR039605 GO:0003680
Gma17g01420 366 SUPERFAMILY AF0104/ALDC/Ptd012-like 162 280 - -
Gma17g01420 366 MobiDBLite consensus disorder prediction 288 325 - -
Gma17g01420 366 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 58 329 - -
Gma17g01420 366 MobiDBLite consensus disorder prediction 52 66 - -
Gma17g01420 366 CDD DUF296 163 277 IPR005175 -
Gma17g01420 366 Gene3D - 164 290 - -
Gma17g01420 366 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01420 Gma-Chr17 13342884 13348596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01420 85 366 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 51.290 4.39e-77 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01420 - - gmx:100789717 528.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01420 17 13342884 13348596 Gma17g01420 17 13342884 13348596 ECH
Gma17g01420 17 13342884 13348596 Gma05g01128 05 32213118 32218221 GST
Gma01g02018 01 55611603 55615055 Gma17g01420 17 13342884 13348596 PCT
Gma11g00392 11 3183029 3187015 Gma17g01420 17 13342884 13348596 PCT
Gma17g01420 17 13342884 13348596 Gma01g02018 01 55611603 55615055 PCT
Gma17g01420 17 13342884 13348596 Gma11g00392 11 3183029 3187015 PCT