Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01416 ATGCCAGTTCCACTTGCCCCCTACCCAACACCGCCAGCTCCTTATACACCACCAGCTAATGGTGTACAGAGTCAACTTGTCTGTTCTGGGTGTAGAAACCTTCTAGTGTTTCCAGTTGGAGCCACCTCCGTGTGCTGTGCTGTTTGCAATGCTGTCACAGCAGTGCCACCTCCTGGCACAGAAATGGCCCAGTTAGTATGTGGAGGTTGCCATACTTTACTCATGTACATCCGGGGCGCGACAAGTGTGCAATGTTCATGTTGTCACACTGTCAATCTAGCTTTGGAAGCAAATCAGGTGGCACATGTCAACTGTGGGAACTGCAGGATGCTACTGGCGTACCAATATGGAGCAAGATCCGTGAAATGTGCAGTTTGCAATTTTGTAACATCAGTTGGGGCCACAGCAAGCACCACTGAGCAGAAGTTCAGCACCTAA 438 0.5 MPVPLAPYPTPPAPYTPPANGVQSQLVCSGCRNLLVFPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLAYQYGARSVKCAVCNFVTSVGATASTTEQKFST 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01416 145 SUPERFAMILY Multiheme cytochromes 28 126 IPR036280 -
Gma17g01416 145 Pfam LSD1 zinc finger 67 91 IPR005735 -
Gma17g01416 145 Pfam LSD1 zinc finger 28 52 IPR005735 -
Gma17g01416 145 Pfam LSD1 zinc finger 105 129 IPR005735 -
Gma17g01416 145 PANTHER PROTEIN LSD1 1 142 IPR040319 -
Gma17g01416 145 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 25 55 IPR005735 -
Gma17g01416 145 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 64 93 IPR005735 -
Gma17g01416 145 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 102 132 IPR005735 -
Gma17g01416 145 PANTHER PROTEIN LOL1 1 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01416 Gma-Chr17 13302041 13304716 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Gma17g01416 zf-LSD1 5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01416 - - gmx:100306356 276.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01416 17 13302041 13304716 Gma17g01416 17 13302041 13304716 ECH
Gma17g01416 17 13302041 13304716 Gma05g01133 05 32268292 32270951 GST
Gma01g02020 01 55632928 55635447 Gma17g01416 17 13302041 13304716 PCT
Gma17g01416 17 13302041 13304716 Gma01g02020 01 55632928 55635447 PCT