Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01412 ATGGGTTGCACCATGAGGGAAAAGCACATCAGAGCTAATCGGAGACCCCGATCGGTGAAGCCGGACCCGGATTCTTGCGACAAAGATGCCATATCCAAATCCATAGCCGAGTCTGGCCTCAAGCCCTTCAAATACCATCTGGGCCTCAACGATTCTTCCCAGAGTCCGAATTCGATCCCTAATGCTGAGGAAACCGGGTGGGGTTACTGTACAGAGGAACAATTGGAAGAGATTCTGTTGAAAAACTTGGAATTTATATACAACGAAGCTGTTTCGAAGCTTGTTGCGTTGGGATATGATGAGGATGTTGCTGTTAAGGCCATACTGCGAAATGGACATTGTTATGGTGGCATGGATGTGCTGACGAATATTTTGCACAATTCCTTGGCTTTTTTGAATAGTAATAGTGATAGTGGTGGTGGTGGTGGTGGTGCTGGTTATAATAGTAATGGTGGGAATTTGGATGAGTCTGACCCTGTGTTCTCTGATTTGAGGCAGTTGGAGGAGTACTCTTTGGCGGGTATGCTGTGTTTGTTGCAACAAGTGAGGCCTCATTTGAGCAAAGGGGATGCCATGTGGTGTTTGCTCATGAGTGATCTTCATGTTGGGAGGGCTAGTGCTATGGAGATTCCGGAGCCGGGCAATGGGAGCACTGTGCCGGCTGCCGGTGAGGTTGGTGCCAATTTGGTTGGTGCTATGGCGCCAGCTTTGTGTAGGTTTCATGGGGGGTGGGGATTTGGAAGTGGGGGAGGCTTGGAATTTCCTGTGAATGGGATATTCTCTTGTGGTGCAGAGATGAATTTGCAGCTGCAACGAGACATTGAGTTTCCGAAGAGGTTTAATCTTTCTCCTTCAATGAAGTCCTTGTTGAAGAGAAATGTTGCTATGTTTGCTGCTGGTTTTAGGGCAAACTCCAAGCAATTGCAGGCACAGGTGAAGGTCGTTCCCGGCCGGAGTACAGTGCCTAGTTTGGATTCTTCGGCTGTATCTGGGACAGAAGTCCCGGCTGAGCAGTCCGGAGGAAATTCACAGAATCTTGATAGCCAAGATGCTGTGAATTCGGTGCAGAGTAAATTTGGTGATTTGAATCTTGATGAGAATTTGGAGTTAGTGGCGGAGGATCAGAAGGATGAGGTGATAGTTACTTTATTTCATCAGATTAAGGATCTTGAGAAACAGGTCAGTGAGCGAAAAGATTGGGCTCATCAGAAGGCAATGCAGGCAGCAAGAAAGCTAAGCAGTGATCTGACTGAGCTCAAAATGTTGCGGATGGAAAGAGAGGAGACTCAAAAATTGAAGAAAGGAAAACCAGTGCTTGAGGACACAACCATGAAGAGACTCTCAGAGATGGAGAATGCTTTGAGAAAGGCCAGTGGTCAACTGGACCTTGGGAATGCAGCTGTGAGGAGACTAGAAACTGAGAATGCAGAAATGAAAGCAGAGATGGAGGCTTCCAAATTAAGTGCATCAGAATCGGTGACAGCTTGCTTAGAAGTTGCAAAAAGGGAGAAAAAATGCTTGAAAAAACTTCTAGCTTGGGAAAAACAGAAAGCTAAGCTGCAGCAAGAGATTTCTGATGAAAAAGAGAAGATATTAAAGACAAAAGAAATATTGGTTCAGATTAGACAATGTCAAAAGGAAGCTGAGGTTAAGTGGAAGGAGGAGCTGAAGGCTAAAGAGGAAGCCCTAGCACTAGTTGAGGAGGAACGACACTGTAAGGAAGCAGCCGAGTCTAACAATAAGAGGAAGCTCGAGGCATTGCGTCTGAAGATAGAGATAGATTTCCAGCGCCACAAGGATGATCTACTAAGACTCGAGCAGGAGCTTTCACGGCTTAAAGCATCTGCTCAGTCTGCTGAGTTGCATAACCAGTCAAGCACTTCACCTACAAGCGACTGCAAGGGTGCAAAGCCCCAAAGAGAGACCATTGCTAGGCTGCTTCAAGAATTAGATAATCTGGAGGACTTTTCTGAGAAAGAAATAAATAGCAACAGAGAATGCATTGTATGTATGAAAGATGAAGTCTCCATTGTTTTCTTGCCATGTGCGCACCAAGTTATGTGTGCTAGTTGCAGTGATGAGTATGGAAGAAAAGGCAAGGCTACTTGTCCTTGCTGCAGGGTTCAAATCCAACAGAGAATCCGTGTATTTGGGGCAAGTTCCTAG 2166 0.4584 MGCTMREKHIRANRRPRSVKPDPDSCDKDAISKSIAESGLKPFKYHLGLNDSSQSPNSIPNAEETGWGYCTEEQLEEILLKNLEFIYNEAVSKLVALGYDEDVAVKAILRNGHCYGGMDVLTNILHNSLAFLNSNSDSGGGGGGAGYNSNGGNLDESDPVFSDLRQLEEYSLAGMLCLLQQVRPHLSKGDAMWCLLMSDLHVGRASAMEIPEPGNGSTVPAAGEVGANLVGAMAPALCRFHGGWGFGSGGGLEFPVNGIFSCGAEMNLQLQRDIEFPKRFNLSPSMKSLLKRNVAMFAAGFRANSKQLQAQVKVVPGRSTVPSLDSSAVSGTEVPAEQSGGNSQNLDSQDAVNSVQSKFGDLNLDENLELVAEDQKDEVIVTLFHQIKDLEKQVSERKDWAHQKAMQAARKLSSDLTELKMLRMEREETQKLKKGKPVLEDTTMKRLSEMENALRKASGQLDLGNAAVRRLETENAEMKAEMEASKLSASESVTACLEVAKREKKCLKKLLAWEKQKAKLQQEISDEKEKILKTKEILVQIRQCQKEAEVKWKEELKAKEEALALVEEERHCKEAAESNNKRKLEALRLKIEIDFQRHKDDLLRLEQELSRLKASAQSAELHNQSSTSPTSDCKGAKPQRETIARLLQELDNLEDFSEKEINSNRECIVCMKDEVSIVFLPCAHQVMCASCSDEYGRKGKATCPCCRVQIQQRIRVFGASS 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01412 721 MobiDBLite consensus disorder prediction 1 30 - -
Gma17g01412 721 Pfam Family of unknown function (DUF6592) 82 208 IPR046527 -
Gma17g01412 721 Coils Coil 595 622 - -
Gma17g01412 721 MobiDBLite consensus disorder prediction 616 635 - -
Gma17g01412 721 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 720 - -
Gma17g01412 721 MobiDBLite consensus disorder prediction 616 637 - -
Gma17g01412 721 Coils Coil 503 537 - -
Gma17g01412 721 Coils Coil 461 488 - -
Gma17g01412 721 MobiDBLite consensus disorder prediction 16 30 - -
Gma17g01412 721 SUPERFAMILY RING/U-box 648 713 - -
Gma17g01412 721 Pfam Zinc finger, C3HC4 type (RING finger) 664 712 - -
Gma17g01412 721 Coils Coil 549 576 - -
Gma17g01412 721 MobiDBLite consensus disorder prediction 319 352 - -
Gma17g01412 721 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 652 718 IPR013083 -
Gma17g01412 721 ProSiteProfiles Zinc finger RING-type profile. 667 707 IPR001841 -
Gma17g01412 721 PANTHER OS05G0141500 PROTEIN 1 720 IPR046934 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01412 Gma-Chr17 13250071 13256016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01412 641 717 C3H Transcription Factor Family AT1G73950 36.905 1.93e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01412 - - gmx:100797917 1359.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01412 17 13250071 13256016 Gma17g01412 17 13250071 13256016 ECH
Gma17g01412 17 13250071 13256016 Gma05g01138 05 32401325 32408962 GST
Gma11g00389 11 3161355 3164885 Gma17g01412 17 13250071 13256016 PCT
Gma17g01412 17 13250071 13256016 Gma11g00389 11 3161355 3164885 PCT