Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01404 ATGGGAAGTGGAGTTTCAACCCTCTGTTGGTGCTCTCGGATCAACGAACCCGACGTTATTTTCACCGCCACCGACCCATTGGACGAAACCCTAGGCCACTCCTTCTGCTACGTCAGATCCTCCGCGCGCTTCCTTTCTCCCACTCGCTTTCTCAGTCCTTCCACTTCCCTCCGTTTCTCTCCGACTCACGAGCCCCGAACCCGACCCGAATTCCACGAAACCGGTTTTAAGGCCATTTCCGGAGCCTCCGTTAGCGCCAACAGCTCCCTTCCGACAACAGTCATTCGCTTAGATGAAGAAGTGAATGGAGTTTCCTCCAGGGGTAATATCATAAATGGCTTCGAGAGCACGGCGTCGTTTTCCGCCCTCCCGCTCCAGCCCGTTCCCCGAGGCGGCGAGCCTTTCGAGGTCAGCGGCTTCTTCCTCTCCGGTCCTATTGAATCCAACGCCGTCTCCGGTCCTCTCCCCGCCGCCGCCGACTTCGGCGGCGGCGAGATTCCTTTCTCGGCGCCTCTGGCCGGACTTTACGGTAAAAAGAACAGGAAGAAGAAGATGATTTCGGGGTTCCGGAAGGCGTTCAACCGGAACGCGCCGGAGAAGAAGCGGCCGTGGGTGGTGCCGGTGCTGAACTTCGCCGGAAGAAAAGAAAGCGAGGGGAGGCCGCCTCCGCTGCCGGAAGAAAAGAGCAATGTTCAGTGGGCGTTGGGGAAGGCCGGTGAGGATCGAGTCCACGTGGTGGTGTCGGAGGAGCAGGGATGGTTGTTCGTCGGGATTTACGACGGTTTCAACGGCGGCGACGCGCCGGAGTTTCTGATGGGGAACCTCTACCGCGCCGTTCATAACGAGCTTCAGGGTTTGTTTTGGGAACTCGAAGAAGAACAACAAGAACAAGAACAACAACAACCGTTACCGCAAGAGAGCAATCCCGTGGTGGAAGGAACGGAGAGTAAACGGCGTAAGCTGTGGGAGCTTCTTGCCGAGGACGGACTCGACCTTTCCGGTTCGGATAGGTTCGCATTTTCCGTCGACGATGCGCTGAGTGTTAACAATGCCAATGCTGGTAGTGCTGTGAGTAGAAGGTGGTTGTTGCTATCGAAGCTGAAGCACGGGTTGAGGAAGCAGAAGGAGGGTGGAGGGAGAGGGTGGAATCTGGGGAATGAAGAGAAAGAGAAGGAGAAGGAGAATCAAGAGAAGCATTGTGGGAGGAAGAGAAGAGTGGGACCAGTGGATCATGGACTGGTTTTGAGTGCCTTGTCTCGGGCGCTTGAGTTCACTGAGCTTGCTTATTTGGACATGACAGATAAGCTTCTGGACACGAATCCGGAGCTTGCTTTGATGGGTTCGTGTTTGTTGGTTGCTTTGATGAGGGATGAGGATGTGTATCTGATGAATGTTGGGGATAGTCGGGCTATTGTTGCACACTATGAACCGAAAGAGGTTGATTCGTGTGTTGAATTGGGAAGCAAGGGAGGTGTTGAGTCCGGTGGTGCCGAGAGCATAGTTGAGGAGCCCCTGGGTTTGGGTCAAATTGGGAGTGCTCAGCAACAGAGGTTGGTGGCATTGCAGCTGTCAACTGATCACAGCACCAGCATTGAAGAAGAAGTCATCAGGATTAAAAACGAGCATCCTGATGATGCCCAGTGTATACTCAATGATAGAGTTAAAGGTCGCCTTAAGGTCACCAGAGCATTTGGGGCTGGATTTTTGAAACAGCCGAAGTGGAATGATGCAGTACTAGAGATGTTTCGTAATGAATATATTGGCACTGCTCCATATATATCCTGCTCTCCTTCACTACGTCACCATAGATTATGCCAGAGAGATCAGTTCCTGATCCTCTCATCTGATGGTTTATATCAATATCTAAGCAATGAAGAAGTGGTTTCTCATGTTGAGAGCTTCATGGAAAAATTTCCAGAAGGGGATCCAGCCCAACATTTAATAGAAGAGCTGCTCCTCCATGCAGCTAAGAAGGCTGGAATGGATTTTCATGAATTGCTAGATATCCCACAAGGAGATCGGAGGAAGTATCACGATGATGTTACTGTCATGGTGATATCACTTGAAGGGAGAATCTGGAAATCATCAGGGAAGTATCCATGA 2103 0.5183 MGSGVSTLCWCSRINEPDVIFTATDPLDETLGHSFCYVRSSARFLSPTRFLSPSTSLRFSPTHEPRTRPEFHETGFKAISGASVSANSSLPTTVIRLDEEVNGVSSRGNIINGFESTASFSALPLQPVPRGGEPFEVSGFFLSGPIESNAVSGPLPAAADFGGGEIPFSAPLAGLYGKKNRKKKMISGFRKAFNRNAPEKKRPWVVPVLNFAGRKESEGRPPPLPEEKSNVQWALGKAGEDRVHVVVSEEQGWLFVGIYDGFNGGDAPEFLMGNLYRAVHNELQGLFWELEEEQQEQEQQQPLPQESNPVVEGTESKRRKLWELLAEDGLDLSGSDRFAFSVDDALSVNNANAGSAVSRRWLLLSKLKHGLRKQKEGGGRGWNLGNEEKEKEKENQEKHCGRKRRVGPVDHGLVLSALSRALEFTELAYLDMTDKLLDTNPELALMGSCLLVALMRDEDVYLMNVGDSRAIVAHYEPKEVDSCVELGSKGGVESGGAESIVEEPLGLGQIGSAQQQRLVALQLSTDHSTSIEEEVIRIKNEHPDDAQCILNDRVKGRLKVTRAFGAGFLKQPKWNDAVLEMFRNEYIGTAPYISCSPSLRHHRLCQRDQFLILSSDGLYQYLSNEEVVSHVESFMEKFPEGDPAQHLIEELLLHAAKKAGMDFHELLDIPQGDRRKYHDDVTVMVISLEGRIWKSSGKYP 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01404 700 SMART PP2C_4 224 686 IPR001932 -
Gma17g01404 700 Coils Coil 280 300 - -
Gma17g01404 700 CDD PP2Cc 410 688 IPR001932 -
Gma17g01404 700 ProSiteProfiles PPM-type phosphatase domain profile. 225 688 IPR001932 -
Gma17g01404 700 MobiDBLite consensus disorder prediction 293 314 - -
Gma17g01404 700 PANTHER PROTEIN PHOSPHATASE 2C 29 372 698 - -
Gma17g01404 700 PANTHER PROTEIN PHOSPHATASE 2C 29 14 297 - -
Gma17g01404 700 MobiDBLite consensus disorder prediction 297 311 - -
Gma17g01404 700 MobiDBLite consensus disorder prediction 375 401 - -
Gma17g01404 700 Pfam Protein phosphatase 2C 521 659 IPR001932 -
Gma17g01404 700 Gene3D - 224 695 IPR036457 -
Gma17g01404 700 PANTHER PROTEIN PHOSPHATASE 2C 14 297 IPR015655 GO:0004722|GO:0006470
Gma17g01404 700 PANTHER PROTEIN PHOSPHATASE 2C 372 698 IPR015655 GO:0004722|GO:0006470
Gma17g01404 700 SUPERFAMILY PP2C-like 237 689 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01404 Gma-Chr17 13137534 13141636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01404 1 699 PP2C-type Phosphatase Gene Family AT2G35350 55.417 0.0 736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01404 - - gmx:100779143 1338.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01404 17 13137534 13141636 Gma17g01404 17 13137534 13141636 ECH
Gma17g01404 17 13137534 13141636 Gma05g01145 05 32537217 32542622 GST
Gma01g02024 01 55656041 55661161 Gma17g01404 17 13137534 13141636 PCT
Gma11g00386 11 3144553 3149351 Gma17g01404 17 13137534 13141636 PCT
Gma17g01404 17 13137534 13141636 Gma01g02024 01 55656041 55661161 PCT
Gma17g01404 17 13137534 13141636 Gma11g00386 11 3144553 3149351 PCT