Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01397 ATGCTGATAAGTGGTATTGATCGATCTTTTACTTTCTGTGGGAGACTGAGAAACGATGCCAAGCCAGCTATGGTTTTCACTGCCAATGACTTACAAGAATGGAAAGATTTTCCCAAAGGACTCAAGGTTCTTCTCCACGAGAGAGACAACATTTCTGCTGCAGAGATAAGGGCAAAGCTTGAAGCCATGGACTATAATGTTTCTACATTCTGTGATGAGAATGACGCCTTGTCAGTGATCTCAAGTGGACTTGAAAGCTTCCACATTGCCATAGTGGAGGTGAGTTCAAGCAGTGCCCAGGGAGGTTTCAAATTTCTTGAGAATGCCAAGGACTTGCCAACCATTATGACTTCAAACAATCATTGCCTGAACACCATGATGAAGTGCATAGCGCTTGGTGCAGTTGAGTTCCTCAGCAAACCACTCTCTGAGGACAAGCTCAGAAATATCTGGCAACATGTGGTTCACAAGGCATTCAATGCTGGGGCAAACATCCTGTCTGAATCACTTAAACCTGTCAAAGAATCAGTAGCGTCCATGTTGCAGCTCCAAACAGACAATGAACAACATGAAAGTAGAGTATCCATTGATATAGAGAAAGTATCCAGCTTTGTTGATAATGATCATGAGCTGTCTCCTGGAAATGATAAATATCCAGCTCCTTCAACCCCACAATTGATGCAAGGGACAAGATTGTTGGACGATGGTGATTGCCAAGAGCAGGCTAATTGCTCAACAGAAAAAGAAAGTGGGGAACATGATGGAGAATCTAAATCTGTCGAAACTACATGTGGTAATTTGAATGCTGAAATTACTCCTCAACAAAGGAAATCTGAAATTACTTTGGTTAGGGAGGAAGTGGATATAGTTGATGCTTCCATGGGTGAGAGTGTTGCTTCTCCACATACACAAAAAAGAAAAGTTCTAAGCAACACTGACAGAAATACAAAAGCTTCAAATAAAGTAGGTGTTCATAGTGATTCATGTGAGATAAGAGGAAAGCGGAAAAAGATAAAAGTAGACTGGACACCTGAGCTTCACAAAAAGTTTGTGAAGGCAGTGGAGCAACTAGGCATTGATCAAGCCATTCCTTCTCGAATATTGGAATTAATGAAAGTGGAGAGCTTGACAAGGCATAACGTGGCAAGCCATCTTCAGAAGTATAGAATGCATAAGAGACAAATCTTGCCCAAGGAAGAAGAACGAAAATGGTCGAATCAAAGAGAAAGGAGCTATAGTGTTCAAAGACCAATTATGGCATTTCCTCCATATCATTCTAATCACACCCATCCACTGCCTCCTGTATATCCTATGTGGGGACAATCTGGCGGTCCAATGGCTGGCATGCAGATTTGGGGATCTCCTGGTTATCCCTTGTGGCAGCCTACTGCTGAAAATTGGCGCTGGAAACCATTTCCAGGGATGCATGCAGATGCATGGGGCTGTCCAGTGTTACCAATACCACCTCAAGCTCCTGGTTTTCCTTACTCTCAGAATATGCCTGCATTGCTCAATGCTGATGCAGCGGATCACACATTTACCATGCCACAAAGTTCCTTCGAGCATTATCTGGCAGAGGAGGTAGTTGACAAGGTTGTGAAAGAGGCAATAAACAAACCATGGCTACCCTTGCCCTTGGGTTTGAAACCTCCTTCCACAGAAAGTGTGTTGGCTGAGCTATCAAGGCAAGGCATTTCCAACATCCCTCCAAAGGGTTCAAAATCATGCTGA 1731 0.4327 MLISGIDRSFTFCGRLRNDAKPAMVFTANDLQEWKDFPKGLKVLLHERDNISAAEIRAKLEAMDYNVSTFCDENDALSVISSGLESFHIAIVEVSSSSAQGGFKFLENAKDLPTIMTSNNHCLNTMMKCIALGAVEFLSKPLSEDKLRNIWQHVVHKAFNAGANILSESLKPVKESVASMLQLQTDNEQHESRVSIDIEKVSSFVDNDHELSPGNDKYPAPSTPQLMQGTRLLDDGDCQEQANCSTEKESGEHDGESKSVETTCGNLNAEITPQQRKSEITLVREEVDIVDASMGESVASPHTQKRKVLSNTDRNTKASNKVGVHSDSCEIRGKRKKIKVDWTPELHKKFVKAVEQLGIDQAIPSRILELMKVESLTRHNVASHLQKYRMHKRQILPKEEERKWSNQRERSYSVQRPIMAFPPYHSNHTHPLPPVYPMWGQSGGPMAGMQIWGSPGYPLWQPTAENWRWKPFPGMHADAWGCPVLPIPPQAPGFPYSQNMPALLNADAADHTFTMPQSSFEHYLAEEVVDKVVKEAINKPWLPLPLGLKPPSTESVLAELSRQGISNIPPKGSKSC 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01397 576 Gene3D - 334 395 - -
Gma17g01397 576 MobiDBLite consensus disorder prediction 297 325 - -
Gma17g01397 576 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 337 392 IPR006447 GO:0003677
Gma17g01397 576 Gene3D - 38 158 - -
Gma17g01397 576 SUPERFAMILY Homeodomain-like 336 394 IPR009057 -
Gma17g01397 576 Pfam Myb-like DNA-binding domain 340 389 IPR001005 -
Gma17g01397 576 PANTHER TRANSCRIPTION ACTIVATOR GLK1 24 574 IPR044825 GO:0003700|GO:0045893
Gma17g01397 576 SUPERFAMILY CheY-like 39 158 IPR011006 -
Gma17g01397 576 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR2 24 574 - -
Gma17g01397 576 ProSiteProfiles Response regulatory domain profile. 42 155 IPR001789 GO:0000160
Gma17g01397 576 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 334 393 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01397 Gma-Chr17 12993611 12999991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01397 24 576 Response Regulator Gene Family AT4G18020 49.060 7.62e-140 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gma17g01397 Myb_DNA-binding 1.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01397 - - gmx:100777535 1155.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01397 17 12993611 12999991 Gma05g00664 05 7385860 7392700 GST
Gma01g02037 01 55769647 55774524 Gma17g01397 17 12993611 12999991 PCT
Gma11g00376 11 3058196 3063365 Gma17g01397 17 12993611 12999991 PCT
Gma17g01397 17 12993611 12999991 Gma01g02037 01 55769647 55774524 PCT
Gma17g01397 17 12993611 12999991 Gma11g00376 11 3058196 3063365 PCT